Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2533 ATGAGTAACTCCGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGCAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 525 44.19 MSNSEDKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36647795 36649263 - CrPI670011_05g025330.1 Cre05g2533 499046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2533 174 Gene3D High mobility group box domain 106 159 IPR036910 -
Cre05g2533 174 CDD HMG-box_SF 118 154 - -
Cre05g2533 174 FunFam protein CRABS CLAW isoform X3 109 168 - -
Cre05g2533 174 Pfam YABBY protein 15 157 IPR006780 GO:0007275(InterPro)
Cre05g2533 174 SUPERFAMILY HMG-box 103 155 IPR036910 -
Cre05g2533 174 MobiDBLite consensus disorder prediction 84 116 - -
Cre05g2533 174 MobiDBLite consensus disorder prediction 84 105 - -
Cre05g2533 174 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2533 K25796 - - csv:101219863 308.145
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2533 Cre-Chr5:36647795 Cre05g2549 Cre-Chr5:36767805 1.10E-97 dispersed
Cre05g2533 Cre-Chr5:36647795 Cre11g0793 Cre-Chr11:5151634 1.20E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2533 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre05g2549 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre09g2142 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.0 6.3e-42 167.5
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.2e-54 209.9
Cre09g2142 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.3e-43 173.3
Cre06g1989 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.4e-42 169.1
Cre11g0793 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 1.3e-40 163.3
Cre10g0542 . 26 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.1 3.3e-39 158.7
Cre09g2142 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 1.2e-50 196.8
Cre10g0542 . 35 194 C2C2-YABBY Transcription Factor Family AT4G00180 54.3 3.5e-37 152.1
Cre05g2709 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.2 3.6e-39 159.1
Cre06g1989 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.1e-62 236.5
Cre11g0793 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 1.0e-60 229.9
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.2e-48 189.9
Cre09g2142 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53780 PF04690 YABBY 5.70E-55 CL0114 Cre TF