Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2533 ATGAGTAACTCCGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGCAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 525 44.19 MSNSEDKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36647795 36649263 - CrPI670011_05g025330.1 Cre05g2533 499046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2533 174 Gene3D High mobility group box domain 106 159 IPR036910 -
Cre05g2533 174 CDD HMG-box_SF 118 154 - -
Cre05g2533 174 FunFam protein CRABS CLAW isoform X3 109 168 - -
Cre05g2533 174 Pfam YABBY protein 15 157 IPR006780 GO:0007275(InterPro)
Cre05g2533 174 SUPERFAMILY HMG-box 103 155 IPR036910 -
Cre05g2533 174 MobiDBLite consensus disorder prediction 84 116 - -
Cre05g2533 174 MobiDBLite consensus disorder prediction 84 105 - -
Cre05g2533 174 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2533 Cre-Chr5:36647795 Cre05g2549 Cre-Chr5:36767805 1.10E-97 dispersed
Cre05g2533 Cre-Chr5:36647795 Cre11g0793 Cre-Chr11:5151634 1.20E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53780 PF04690 YABBY 5.70E-55 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2533 K25796 - csv:101219863 308.145