Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2537 ATGTGTGGAATCGCTTTGATCGTTTCTGGCATTCGCCTTGATTTATCATCTCTACATGTAGACGCCAGATCCCCGTTTCCTCATCCAGTTCACGAGCAACTTGAGTTTTCGATAGATGATCTTAAAGCGGCATTACGGAGAAGAGGGCCCGATAGCTTAGGCGGAGTGCAGGTTTTTATTTCTTCAAAATCTTCTAATCCCGGTGAAGAGCAGCAGTTTGAGTGTTTCATTGAGAGGGTTGATGATGGCGTTGCATTCCAGAGTCAAAATGATCAACACGAGATGGAAAATGGCCGGTTCTGTTCTGAAAATGGATGTATTCTCCAATCAGAGAACAGTTGCAGTAGGCCCATCTCTGGTGCGGAGTTTTATTTACTAGGGGCTACGTTACAGCTTAGAGGGCTTAACCCTATTGTTCAGCCACTGATGGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGAGGAATACACGTTGAGTGGCATGAAAACGATGCCGAAACTCTTATGCTAGCTCTTGGGAATTGTTGCGCATGTAATTTTAGTTTAGATATGAACACATGTGAAGGTGAATGTAAGAGAGAAAGAACTGTTGTAGATATTCTTTCAAAGATTCAAGGGCCTTGGTCAATCATCTACTGGCAGGATAGTGCAAAAACTTTGTGGTTTGGTCGGGATGCCTTTGGTAGGAGAAGTCTTCTTGTTCACTGGCCAACAGTGGAGGATTCTCGATTTCTGTTGTCTTCTGTGTCACCAGCTTCTTCCACGTTTCACGGCTCAGGGCTTGAAGATGACGATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTACCATGTGGGATTTACAGCATCTCTTTTGATGCTCTGAGAACTGATGGTTACCTGGTTGGTGAAGTCAAAAGGCATGAATGGACCAATGAATCACTGAAAGAGCTTGTCGAGTGGAAAAGAACTCGTATTGTACCTGAACCTGGAGACATCTCCACTCCATATCACAAGGATCTTTTGTCACAACATCAAAGCCATTCAGCATGTTTACCTAACTTGCAACCAGTATCTGGGAGTATCCAAGCTCCTGTCTCAACTCCTGCAGAGATTCTGCTGGATGCTCTAAGGAAGTCTCTAATCCGGCGGACTTCACTTTATACAATTTTCCAGGGTACAATATCTGCTTCCAGAAAAGCAGAACTTGTTCCAGTGGCCATTCTTTTTTCTGGGGGATTGGATTCTATGATACTAGCAGCATTACTGGATGAATGTCTCGATACCTGCTATGAGATAGATCTTCTTAATGTCAGTTTTGATGGTTGTTCTGCACCTGATCGAATCTCTGCGAAGGCTGGAGTTAAGGAACTGAGTAGAATTGCCCCTCTAAGAAGGTGGAAGCTGGTTGAGATTGATGCTGACTTGTCAAATTTGACCTCTGAAACCAAGCACGTCATGTCGCTAATAAATCCTGCAAATACATACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCAATGGTTGGATTTATGAATCAATTGACAAGGATGAGAAGTTTCATCAACGTGTAAAATACAAGTCTGAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGCTATGGTAGGCATCGAACAAAATATAGACAAGGGGGCTGGCATCTTTTAAATGAGGAAATGAAGTTGGATATCCAGAGAATCTGGAAGAGAAATCTAGGGAGAGATGACAGATGTATTGCAGATAATGGCAAGGAGGCTAGATTTCCCTTTTTGGATGAAGACGTTATACATACATTGCTAGCATTTCCTCTATGGGAGGTTACCGACCTTGAGAAACCTGCTGGGACCGGTGATAAGAAGATACTAAGGGAGGTTGCGAAACTACTTGGTCTGCACGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGTTTGGCTCGAGGATTGCGAGGGAATCAAACCGCAAGAACTTTGGAAGCAACCGGGCTGCTAATCAGGCCTCAGCAGGAAGTGTGAAGTTCAACAGGCAATCCGTTCTTCACGCCGTTTTGCACACCATACGCCGTCGGCCACCGTTCCGCCTCCCCTACCGCTTCCCTCCGTCGAACGCCGCAGTCTCGTCGCAAGTCCGTTCGCCGGTCGCCGGCATCTCCTTCCCACCTTTCCTTCTCCCTCCCATTGCCGCCCACACAGCCGGCAGCACCGCCGACGCTGGGCACTTTAATCCCTCAAATCCCCGCCGGACGGAAGCTACTCTCTTAGTACTAAATCTGAAGTGCTTTCACATGGAGGATCAGAGTTCTAGGAGTGGTAATTGTGGAAACGGTAGCGAGGACCAGTGGAGAGCTGAGGAAGCGATTGCTGGAAACTCCGAGGCCCTTAAAACATTGAGAGAGCTGATCGTCTTCCCGCTACTATTCTCCCAGGAAGCTCAAAAAATCGGTCTAAGATGGCCTCGAGGCTTGCTTTTGTACGGTCCCCCTGGCACTGGCAAGACAAGTTTAGTACGTGCAATTGTTCAGGAATGCGGTGCACATTTAACCACTATCAGTCCCCATTCAGTTCACAGAGCACATGCTGGAGAAAGTGAAAAAGTTTTGCGTGAGGCCTTCTCCAAAGCATCATCTCATGCAATATCCGGAAAACCATCAGTTATCTTTATAGATGAAATTGATGCACTTTGTCCTCATCGGGATTCTAGGAGAGAGCAAAATGTTCGTATAACCACTCAACTTTCTATATTGATGGACTCCAATAAGCAATCAACATCTGGTAGACCACAAGTTGTCGTAGTTGCATCAACTAACAGAGTGGATGCCATCGATCCTGCACTTAGAAGGTCAGGGCGTTTTGATGCTGAAATAGAAGTAACAGCACCAACTGAGAATGAACGATATCAAATTCTTAGGCTGTACACAAGGAAGGTTCAATTGGATCCAGAAGTTGATTTACGAGCCATAGCTGCATCTTGCAATGGGTTTGTAGGAGCTGACTTGGAGGCTCTGTGTCGTGAGGCTGCAATGGCTGCATTGCAAAGGTGCTCAGGTACAAATGAGAATGCTATTCTCTGTCTGACAACAGAAGACTGGAAGCATGCAAGATCTATCGTTGGCCCAAGTATGACTAGAGGCGTCACTGTGGAAGTTCCGAATGTGACTTGGGATGATATTGGAGGACTAAAAGAATTAAAAAAAAAGCTACAACAGTCGGTTGAATGGCCTATCAAACACGCTGCTTCTTTCTCAAAGTTGGGTATATCACCTGCTCGGGGGATTCTTTTGTACGGGCCTCCAGGTTGCTCAAAAACAACCCTCGCTAAAGCAGCTGCGAATGCTGCTCAAGCATCTTTTTTTTCACTCAGTGGTGCAGAGATGTACTCTATGTATGTTGGCGAGGGAGAGGCTCTACTGCGCAACACTTTTAGAAGAGCTCGTCTCGCTGCACCAAGCATAATATTTTTTGATGAGGCCGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAAGCGGCAACACCGCTGTAGGAGAGAGGCTTCTATCTACATTGTTAACTGAGATGGATGGTCTTGAAGAAGCAAAAGGAATACTAGTTTTAGCTGCTACAAATCGTCCTCATGCCATTGATGCTGCGCTTATGAGACCAGGACGCTTTGACTTGGTGCTCTATGTACCTCCACCAGATTTAGAAGCTCGGTATGAGATACTTCGCGTTCATACTCGTCCAATGAAAATTGGAAGTGACGTCGACCTCAAAAAGATCGCAGAGGATACGGAGCTGTTCACTGGGGCCGAACTCGAAGGCCTATGTAGGGAAGCTGGAATTGTAGCTTTAAGAGAAGACATAACTGCTAGTGTTGTGTGTGGTCGTCATTTCCAGACGGTAAAGGATTGTTTGAAGCCAGCTTTAACCTTGGCAGATATTGATATATACTCCACTTTTATGACGACCCGTTCAGCCCTTCCTTCACAACATTCCGATTTAAGTTCAAATAATAGGATCAACACTAAAAGACATTTGTTGTGTCCTGTATCTTTGGTTAAACTTGGTTTGATTGGCTGTTTCTTTCTTGTTGTTGCTAAATACTTTCTCTCTGAGGAATATCAAGTTGAGCACGAATTGATGACTACCTAG 4149 45.36 MCGIALIVSGIRLDLSSLHVDARSPFPHPVHEQLEFSIDDLKAALRRRGPDSLGGVQVFISSKSSNPGEEQQFECFIERVDDGVAFQSQNDQHEMENGRFCSENGCILQSENSCSRPISGAEFYLLGATLQLRGLNPIVQPLMDASRNILVYNGEIFGGIHVEWHENDAETLMLALGNCCACNFSLDMNTCEGECKRERTVVDILSKIQGPWSIIYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSTFHGSGLEDDDGTCEVSFWEELPCGIYSISFDALRTDGYLVGEVKRHEWTNESLKELVEWKRTRIVPEPGDISTPYHKDLLSQHQSHSACLPNLQPVSGSIQAPVSTPAEILLDALRKSLIRRTSLYTIFQGTISASRKAELVPVAILFSGGLDSMILAALLDECLDTCYEIDLLNVSFDGCSAPDRISAKAGVKELSRIAPLRRWKLVEIDADLSNLTSETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESIDKDEKFHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGGWHLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNRQSVLHAVLHTIRRRPPFRLPYRFPPSNAAVSSQVRSPVAGISFPPFLLPPIAAHTAGSTADAGHFNPSNPRRTEATLLVLNLKCFHMEDQSSRSGNCGNGSEDQWRAEEAIAGNSEALKTLRELIVFPLLFSQEAQKIGLRWPRGLLLYGPPGTGKTSLVRAIVQECGAHLTTISPHSVHRAHAGESEKVLREAFSKASSHAISGKPSVIFIDEIDALCPHRDSRREQNVRITTQLSILMDSNKQSTSGRPQVVVVASTNRVDAIDPALRRSGRFDAEIEVTAPTENERYQILRLYTRKVQLDPEVDLRAIAASCNGFVGADLEALCREAAMAALQRCSGTNENAILCLTTEDWKHARSIVGPSMTRGVTVEVPNVTWDDIGGLKELKKKLQQSVEWPIKHAASFSKLGISPARGILLYGPPGCSKTTLAKAAANAAQASFFSLSGAEMYSMYVGEGEALLRNTFRRARLAAPSIIFFDEADVVAAKRGGSSSGNTAVGERLLSTLLTEMDGLEEAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTRPMKIGSDVDLKKIAEDTELFTGAELEGLCREAGIVALREDITASVVCGRHFQTVKDCLKPALTLADIDIYSTFMTTRSALPSQHSDLSSNNRINTKRHLLCPVSLVKLGLIGCFFLVVAKYFLSEEYQVEHELMTT 1382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36675650 36688712 - CrPI670011_05g025370.1 Cre05g2537 499050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2537 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 1041 IPR027417 -
Cre05g2537 1382 Gene3D - 1048 1232 IPR027417 -
Cre05g2537 1382 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 396 674 - -
Cre05g2537 1382 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 682 IPR051857 -
Cre05g2537 1382 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 29 267 IPR029055 -
Cre05g2537 1382 Gene3D - 966 1047 - -
Cre05g2537 1382 CDD RecA-like_CDC48_r2-like 1069 1229 - -
Cre05g2537 1382 FunFam spermatogenesis-associated protein 5-like protein 1 1232 1318 - -
Cre05g2537 1382 CDD RecA-like_CDC48_NLV2_r1-like 792 963 - -
Cre05g2537 1382 Pfam Asparagine synthase 557 635 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Cre05g2537 1382 Gene3D - 783 964 IPR027417 -
Cre05g2537 1382 FunFam Cell division control protein 48 homolog B 785 964 - -
Cre05g2537 1382 Pfam AAA+ lid domain 1253 1297 IPR041569 -
Cre05g2537 1382 Pfam AAA+ lid domain 988 1022 IPR041569 -
Cre05g2537 1382 Gene3D - 1233 1304 - -
Cre05g2537 1382 FunFam Cell division control protein 48-B-like protein 1048 1232 - -
Cre05g2537 1382 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 255 IPR029055 -
Cre05g2537 1382 CDD Asn_Synthase_B_C 401 652 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Cre05g2537 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1056 1316 IPR027417 -
Cre05g2537 1382 ProSitePatterns AAA-protein family signature. 1201 1219 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g2537 1382 Gene3D HUPs 364 691 IPR014729 -
Cre05g2537 1382 Pfam ATPase family associated with various cellular activities (AAA) 828 963 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g2537 1382 Pfam ATPase family associated with various cellular activities (AAA) 1098 1230 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g2537 1382 SMART AAA_5 824 967 IPR003593 GO:0016887(InterPro)
Cre05g2537 1382 SMART AAA_5 1094 1233 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1016 Cre-Chr4:28772044 Cre05g2537 Cre-Chr5:36675650 5.60E-117 dispersed
Cre05g2537 Cre-Chr5:36675650 Cre10g2132 Cre-Chr10:35913000 2.50E-115 dispersed
Cre03g0609 Cre-Chr3:5009185 Cre05g2537 Cre-Chr5:36675650 2.60E-12 transposed
Cre08g0797 Cre-Chr8:21023245 Cre05g2537 Cre-Chr5:36675650 2.10E-19 transposed
Cre02g2207 Cre-Chr2:35729032 Cre05g2537 Cre-Chr5:36675650 2.80E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2537 - - - 0.0