Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2537 ATGTGTGGAATCGCTTTGATCGTTTCTGGCATTCGCCTTGATTTATCATCTCTACATGTAGACGCCAGATCCCCGTTTCCTCATCCAGTTCACGAGCAACTTGAGTTTTCGATAGATGATCTTAAAGCGGCATTACGGAGAAGAGGGCCCGATAGCTTAGGCGGAGTGCAGGTTTTTATTTCTTCAAAATCTTCTAATCCCGGTGAAGAGCAGCAGTTTGAGTGTTTCATTGAGAGGGTTGATGATGGCGTTGCATTCCAGAGTCAAAATGATCAACACGAGATGGAAAATGGCCGGTTCTGTTCTGAAAATGGATGTATTCTCCAATCAGAGAACAGTTGCAGTAGGCCCATCTCTGGTGCGGAGTTTTATTTACTAGGGGCTACGTTACAGCTTAGAGGGCTTAACCCTATTGTTCAGCCACTGATGGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGAGGAATACACGTTGAGTGGCATGAAAACGATGCCGAAACTCTTATGCTAGCTCTTGGGAATTGTTGCGCATGTAATTTTAGTTTAGATATGAACACATGTGAAGGTGAATGTAAGAGAGAAAGAACTGTTGTAGATATTCTTTCAAAGATTCAAGGGCCTTGGTCAATCATCTACTGGCAGGATAGTGCAAAAACTTTGTGGTTTGGTCGGGATGCCTTTGGTAGGAGAAGTCTTCTTGTTCACTGGCCAACAGTGGAGGATTCTCGATTTCTGTTGTCTTCTGTGTCACCAGCTTCTTCCACGTTTCACGGCTCAGGGCTTGAAGATGACGATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTACCATGTGGGATTTACAGCATCTCTTTTGATGCTCTGAGAACTGATGGTTACCTGGTTGGTGAAGTCAAAAGGCATGAATGGACCAATGAATCACTGAAAGAGCTTGTCGAGTGGAAAAGAACTCGTATTGTACCTGAACCTGGAGACATCTCCACTCCATATCACAAGGATCTTTTGTCACAACATCAAAGCCATTCAGCATGTTTACCTAACTTGCAACCAGTATCTGGGAGTATCCAAGCTCCTGTCTCAACTCCTGCAGAGATTCTGCTGGATGCTCTAAGGAAGTCTCTAATCCGGCGGACTTCACTTTATACAATTTTCCAGGGTACAATATCTGCTTCCAGAAAAGCAGAACTTGTTCCAGTGGCCATTCTTTTTTCTGGGGGATTGGATTCTATGATACTAGCAGCATTACTGGATGAATGTCTCGATACCTGCTATGAGATAGATCTTCTTAATGTCAGTTTTGATGGTTGTTCTGCACCTGATCGAATCTCTGCGAAGGCTGGAGTTAAGGAACTGAGTAGAATTGCCCCTCTAAGAAGGTGGAAGCTGGTTGAGATTGATGCTGACTTGTCAAATTTGACCTCTGAAACCAAGCACGTCATGTCGCTAATAAATCCTGCAAATACATACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCAATGGTTGGATTTATGAATCAATTGACAAGGATGAGAAGTTTCATCAACGTGTAAAATACAAGTCTGAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGCTATGGTAGGCATCGAACAAAATATAGACAAGGGGGCTGGCATCTTTTAAATGAGGAAATGAAGTTGGATATCCAGAGAATCTGGAAGAGAAATCTAGGGAGAGATGACAGATGTATTGCAGATAATGGCAAGGAGGCTAGATTTCCCTTTTTGGATGAAGACGTTATACATACATTGCTAGCATTTCCTCTATGGGAGGTTACCGACCTTGAGAAACCTGCTGGGACCGGTGATAAGAAGATACTAAGGGAGGTTGCGAAACTACTTGGTCTGCACGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGTTTGGCTCGAGGATTGCGAGGGAATCAAACCGCAAGAACTTTGGAAGCAACCGGGCTGCTAATCAGGCCTCAGCAGGAAGTGTGAAGTTCAACAGGCAATCCGTTCTTCACGCCGTTTTGCACACCATACGCCGTCGGCCACCGTTCCGCCTCCCCTACCGCTTCCCTCCGTCGAACGCCGCAGTCTCGTCGCAAGTCCGTTCGCCGGTCGCCGGCATCTCCTTCCCACCTTTCCTTCTCCCTCCCATTGCCGCCCACACAGCCGGCAGCACCGCCGACGCTGGGCACTTTAATCCCTCAAATCCCCGCCGGACGGAAGCTACTCTCTTAGTACTAAATCTGAAGTGCTTTCACATGGAGGATCAGAGTTCTAGGAGTGGTAATTGTGGAAACGGTAGCGAGGACCAGTGGAGAGCTGAGGAAGCGATTGCTGGAAACTCCGAGGCCCTTAAAACATTGAGAGAGCTGATCGTCTTCCCGCTACTATTCTCCCAGGAAGCTCAAAAAATCGGTCTAAGATGGCCTCGAGGCTTGCTTTTGTACGGTCCCCCTGGCACTGGCAAGACAAGTTTAGTACGTGCAATTGTTCAGGAATGCGGTGCACATTTAACCACTATCAGTCCCCATTCAGTTCACAGAGCACATGCTGGAGAAAGTGAAAAAGTTTTGCGTGAGGCCTTCTCCAAAGCATCATCTCATGCAATATCCGGAAAACCATCAGTTATCTTTATAGATGAAATTGATGCACTTTGTCCTCATCGGGATTCTAGGAGAGAGCAAAATGTTCGTATAACCACTCAACTTTCTATATTGATGGACTCCAATAAGCAATCAACATCTGGTAGACCACAAGTTGTCGTAGTTGCATCAACTAACAGAGTGGATGCCATCGATCCTGCACTTAGAAGGTCAGGGCGTTTTGATGCTGAAATAGAAGTAACAGCACCAACTGAGAATGAACGATATCAAATTCTTAGGCTGTACACAAGGAAGGTTCAATTGGATCCAGAAGTTGATTTACGAGCCATAGCTGCATCTTGCAATGGGTTTGTAGGAGCTGACTTGGAGGCTCTGTGTCGTGAGGCTGCAATGGCTGCATTGCAAAGGTGCTCAGGTACAAATGAGAATGCTATTCTCTGTCTGACAACAGAAGACTGGAAGCATGCAAGATCTATCGTTGGCCCAAGTATGACTAGAGGCGTCACTGTGGAAGTTCCGAATGTGACTTGGGATGATATTGGAGGACTAAAAGAATTAAAAAAAAAGCTACAACAGTCGGTTGAATGGCCTATCAAACACGCTGCTTCTTTCTCAAAGTTGGGTATATCACCTGCTCGGGGGATTCTTTTGTACGGGCCTCCAGGTTGCTCAAAAACAACCCTCGCTAAAGCAGCTGCGAATGCTGCTCAAGCATCTTTTTTTTCACTCAGTGGTGCAGAGATGTACTCTATGTATGTTGGCGAGGGAGAGGCTCTACTGCGCAACACTTTTAGAAGAGCTCGTCTCGCTGCACCAAGCATAATATTTTTTGATGAGGCCGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAAGCGGCAACACCGCTGTAGGAGAGAGGCTTCTATCTACATTGTTAACTGAGATGGATGGTCTTGAAGAAGCAAAAGGAATACTAGTTTTAGCTGCTACAAATCGTCCTCATGCCATTGATGCTGCGCTTATGAGACCAGGACGCTTTGACTTGGTGCTCTATGTACCTCCACCAGATTTAGAAGCTCGGTATGAGATACTTCGCGTTCATACTCGTCCAATGAAAATTGGAAGTGACGTCGACCTCAAAAAGATCGCAGAGGATACGGAGCTGTTCACTGGGGCCGAACTCGAAGGCCTATGTAGGGAAGCTGGAATTGTAGCTTTAAGAGAAGACATAACTGCTAGTGTTGTGTGTGGTCGTCATTTCCAGACGGTAAAGGATTGTTTGAAGCCAGCTTTAACCTTGGCAGATATTGATATATACTCCACTTTTATGACGACCCGTTCAGCCCTTCCTTCACAACATTCCGATTTAAGTTCAAATAATAGGATCAACACTAAAAGACATTTGTTGTGTCCTGTATCTTTGGTTAAACTTGGTTTGATTGGCTGTTTCTTTCTTGTTGTTGCTAAATACTTTCTCTCTGAGGAATATCAAGTTGAGCACGAATTGATGACTACCTAG 4149 45.36 MCGIALIVSGIRLDLSSLHVDARSPFPHPVHEQLEFSIDDLKAALRRRGPDSLGGVQVFISSKSSNPGEEQQFECFIERVDDGVAFQSQNDQHEMENGRFCSENGCILQSENSCSRPISGAEFYLLGATLQLRGLNPIVQPLMDASRNILVYNGEIFGGIHVEWHENDAETLMLALGNCCACNFSLDMNTCEGECKRERTVVDILSKIQGPWSIIYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSTFHGSGLEDDDGTCEVSFWEELPCGIYSISFDALRTDGYLVGEVKRHEWTNESLKELVEWKRTRIVPEPGDISTPYHKDLLSQHQSHSACLPNLQPVSGSIQAPVSTPAEILLDALRKSLIRRTSLYTIFQGTISASRKAELVPVAILFSGGLDSMILAALLDECLDTCYEIDLLNVSFDGCSAPDRISAKAGVKELSRIAPLRRWKLVEIDADLSNLTSETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESIDKDEKFHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGGWHLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNRQSVLHAVLHTIRRRPPFRLPYRFPPSNAAVSSQVRSPVAGISFPPFLLPPIAAHTAGSTADAGHFNPSNPRRTEATLLVLNLKCFHMEDQSSRSGNCGNGSEDQWRAEEAIAGNSEALKTLRELIVFPLLFSQEAQKIGLRWPRGLLLYGPPGTGKTSLVRAIVQECGAHLTTISPHSVHRAHAGESEKVLREAFSKASSHAISGKPSVIFIDEIDALCPHRDSRREQNVRITTQLSILMDSNKQSTSGRPQVVVVASTNRVDAIDPALRRSGRFDAEIEVTAPTENERYQILRLYTRKVQLDPEVDLRAIAASCNGFVGADLEALCREAAMAALQRCSGTNENAILCLTTEDWKHARSIVGPSMTRGVTVEVPNVTWDDIGGLKELKKKLQQSVEWPIKHAASFSKLGISPARGILLYGPPGCSKTTLAKAAANAAQASFFSLSGAEMYSMYVGEGEALLRNTFRRARLAAPSIIFFDEADVVAAKRGGSSSGNTAVGERLLSTLLTEMDGLEEAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTRPMKIGSDVDLKKIAEDTELFTGAELEGLCREAGIVALREDITASVVCGRHFQTVKDCLKPALTLADIDIYSTFMTTRSALPSQHSDLSSNNRINTKRHLLCPVSLVKLGLIGCFFLVVAKYFLSEEYQVEHELMTT 1382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36675650 36688712 - CrPI670011_05g025370.1 Cre05g2537 499050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2537 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 1041 IPR027417 -
Cre05g2537 1382 Gene3D - 1048 1232 IPR027417 -
Cre05g2537 1382 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 396 674 - -
Cre05g2537 1382 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 682 IPR051857 -
Cre05g2537 1382 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 29 267 IPR029055 -
Cre05g2537 1382 Gene3D - 966 1047 - -
Cre05g2537 1382 CDD RecA-like_CDC48_r2-like 1069 1229 - -
Cre05g2537 1382 FunFam spermatogenesis-associated protein 5-like protein 1 1232 1318 - -
Cre05g2537 1382 CDD RecA-like_CDC48_NLV2_r1-like 792 963 - -
Cre05g2537 1382 Pfam Asparagine synthase 557 635 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Cre05g2537 1382 Gene3D - 783 964 IPR027417 -
Cre05g2537 1382 FunFam Cell division control protein 48 homolog B 785 964 - -
Cre05g2537 1382 Pfam AAA+ lid domain 1253 1297 IPR041569 -
Cre05g2537 1382 Pfam AAA+ lid domain 988 1022 IPR041569 -
Cre05g2537 1382 Gene3D - 1233 1304 - -
Cre05g2537 1382 FunFam Cell division control protein 48-B-like protein 1048 1232 - -
Cre05g2537 1382 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 255 IPR029055 -
Cre05g2537 1382 CDD Asn_Synthase_B_C 401 652 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Cre05g2537 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1056 1316 IPR027417 -
Cre05g2537 1382 ProSitePatterns AAA-protein family signature. 1201 1219 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g2537 1382 Gene3D HUPs 364 691 IPR014729 -
Cre05g2537 1382 Pfam ATPase family associated with various cellular activities (AAA) 828 963 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g2537 1382 Pfam ATPase family associated with various cellular activities (AAA) 1098 1230 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g2537 1382 SMART AAA_5 824 967 IPR003593 GO:0016887(InterPro)
Cre05g2537 1382 SMART AAA_5 1094 1233 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1016 Cre-Chr4:28772044 Cre05g2537 Cre-Chr5:36675650 5.60E-117 dispersed
Cre05g2537 Cre-Chr5:36675650 Cre10g2132 Cre-Chr10:35913000 2.50E-115 dispersed
Cre03g0609 Cre-Chr3:5009185 Cre05g2537 Cre-Chr5:36675650 2.60E-12 transposed
Cre08g0797 Cre-Chr8:21023245 Cre05g2537 Cre-Chr5:36675650 2.10E-19 transposed
Cre02g2207 Cre-Chr2:35729032 Cre05g2537 Cre-Chr5:36675650 2.80E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35