Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2538 ATGGGGGAAGCAAACGAAGGAGGAAGTAGAGGAATGGAGAAAGTTCCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATCAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGGAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCGTCCATAGCCGGTACCATGCTTTTGAGGGACGATGAGGCTTCTACTCCAGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAAAGGAGACGATTTGAGAAGCAGAGGAATAAGGATGGGATTGGAATGGGGACCGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGCCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTCGGCTATTTCGACGGTGGCACCGCCATTCGGGTTGCCAACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGTTGGCAAAGGCAAAGGTGGCTGTGCATCAGGTGGAGGCGGAGGCTTACCGGCTGTCGGGCAGCCTGCCTCTCAGTGCTCCGCTGAATCGCAGGGTGGAAGCTCGTCGGGAATGTCGGAATTGGACAGTAAACACATCCAAGGATCAAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGGCAGTTCCAAAACAGAGACGAAAAATCCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACGACATCGATGGAAGACATGCCGTGTGTGTTTACAATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGTGAGGAAGTTAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTGTTTGTGA 1164 50.43 MGEANEGGSRGMEKVPLQTEKYPTDLLQRFLCSNSHQTQIRAFNEEEEEDGEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPGSAISTVAPPFGLPTWAAAARQALTGGIVDEVGKGKGGCASGGGGGLPAVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSGSSKTETKNPSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPCL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36697074 36699788 + CrPI670011_05g025380.1 Cre05g2538 499051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2538 387 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 104 140 IPR032310 -
Cre05g2538 387 MobiDBLite consensus disorder prediction 221 325 - -
Cre05g2538 387 MobiDBLite consensus disorder prediction 228 292 - -
Cre05g2538 387 Pfam Tify domain binding domain 346 379 IPR032308 -
Cre05g2538 387 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Cre05g2538 387 PANTHER AFP HOMOLOG 2 11 382 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Cre05g2538 387 Coils Coil 120 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2538 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0570 Cre-Chr7:3471820 Cre05g2538 Cre-Chr5:36697074 3.60E-19 transposed
Cre01g1511 Cre-Chr1:28337450 Cre05g2538 Cre-Chr5:36697074 1.60E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g33 . . . . . Bpe10g00900 Bma14g01666 Bma15g00131 Cmo04g01789 Cmo18g01124 . Cma18g01103 . Car18g01017 Sed06g1778 Cpe09g00223 Cpe01g01507 Bhi07g01484 Tan04g0992 Cmetu10g1842 Lac13g0380 Hepe10g1799 . . Cla05g02390 . . Cco05g2637 Clacu05g2564 Cmu05g2421 Cre05g2538 Cone13ag0904 Cone19ag0901 . . Lsi04g00361 Csa05g02516 Chy10g01060 Cme10g00355 Blo06g00928 Blo11g00794 . . . . . . . . . Cma04g01704 . Car04g01739 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006440 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38