Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2538 ATGGGGGAAGCAAACGAAGGAGGAAGTAGAGGAATGGAGAAAGTTCCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATCAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGGAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCGTCCATAGCCGGTACCATGCTTTTGAGGGACGATGAGGCTTCTACTCCAGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAAAGGAGACGATTTGAGAAGCAGAGGAATAAGGATGGGATTGGAATGGGGACCGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGCCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTCGGCTATTTCGACGGTGGCACCGCCATTCGGGTTGCCAACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGTTGGCAAAGGCAAAGGTGGCTGTGCATCAGGTGGAGGCGGAGGCTTACCGGCTGTCGGGCAGCCTGCCTCTCAGTGCTCCGCTGAATCGCAGGGTGGAAGCTCGTCGGGAATGTCGGAATTGGACAGTAAACACATCCAAGGATCAAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGGCAGTTCCAAAACAGAGACGAAAAATCCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACGACATCGATGGAAGACATGCCGTGTGTGTTTACAATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGTGAGGAAGTTAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTGTTTGTGA 1164 50.43 MGEANEGGSRGMEKVPLQTEKYPTDLLQRFLCSNSHQTQIRAFNEEEEEDGEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPGSAISTVAPPFGLPTWAAAARQALTGGIVDEVGKGKGGCASGGGGGLPAVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSGSSKTETKNPSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPCL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36697074 36699788 + CrPI670011_05g025380.1 Cre05g2538 499051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2538 387 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 104 140 IPR032310 -
Cre05g2538 387 MobiDBLite consensus disorder prediction 221 325 - -
Cre05g2538 387 MobiDBLite consensus disorder prediction 228 292 - -
Cre05g2538 387 Pfam Tify domain binding domain 346 379 IPR032308 -
Cre05g2538 387 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Cre05g2538 387 PANTHER AFP HOMOLOG 2 11 382 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Cre05g2538 387 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0570 Cre-Chr7:3471820 Cre05g2538 Cre-Chr5:36697074 3.60E-19 transposed
Cre01g1511 Cre-Chr1:28337450 Cre05g2538 Cre-Chr5:36697074 1.60E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2538 - - - 0.0