Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2545 ATGGCTTCGATCACAGCCGTAATTCAGTCTCCAATTCATCGGTTACCTTCCTTTCGATTGTCGTCTCCTAAGAGAACAGTTCCCGCCAATTATTTTGTTCTTAAATGTCGATCACTCGCTTCTAAAGCTTTGAACTCGCCGTTTTCACCGTTGACGGAGAATCGAACTGTTTCGCCATCGGTGGAACTATCTAGCAAGGCTATTGGGCTCTTAAGTTCTAGACAACCGTTAAAGTCTCGAAGTGTAGTTCGTCTGCCGGTGGTGAAGGCGGCTGCAGCTGAAGCCGACGGAGCTTCCGATGGGTTGAATAGCCCTTCGAAGAGCTTTGCTGCAAGATTTCCAGCGCTCATTACTGGTTTCTACTTCTGTATGTGGTACTTTTTAAATGTTATCTTCAACATACTCAACAAAAAAGTTTACAATTATTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGCTGGATATTGTCTCATTTCTTGGGCTGTAGGTCTCCCAAAACGTGCCCCGATAGATAAGGAGCTCTTGCTATTATTGACTCCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAATGCTGCTGCTTCTCAATTTGTTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTTTAGGTGTGTCAATGGCATCACTAACGGAACTTTCCTTCAATTGGACTGGCTTTGTGAGTGCAATGATTTCAAACATTGCATTTACCTATAGAAGTATCTATTCGAAGAAAGCAATGACAGGAATGGACAGCACAAACGTGTATGCATACACCACAATAATCGCTCTTTTGTTTTGCATTCCTCCTGCAGTTATGATTGAGGGACCGCAGTTGCTGCAGCATGGTTTTAAGGATGCCATTGCCAAAGTGGGTCTACAAAAGTTCCTGTCTGACCTTTTCTGGATCGGCATGTTTTATCATCTATACAATCAGCTTGCCGCTAATACTCTTGAACGTGTTGCACCATTAACACATGCTGTAGGAAACGTATTGAAGCGAGTTTTTGTGATTGGATTCTCCATTGTTGTTTTTGGCAATAAGATTTCAACTCAAACTGGAATTGGTACTGCTATAGCAATTGCCGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAACAAAAACGGAGGGCTGCTAAAATTCCATCATCATAG 1272 42.61 MASITAVIQSPIHRLPSFRLSSPKRTVPANYFVLKCRSLASKALNSPFSPLTENRTVSPSVELSSKAIGLLSSRQPLKSRSVVRLPVVKAAAAEADGASDGLNSPSKSFAARFPALITGFYFCMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGAGYCLISWAVGLPKRAPIDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSMASLTELSFNWTGFVSAMISNIAFTYRSIYSKKAMTGMDSTNVYAYTTIIALLFCIPPAVMIEGPQLLQHGFKDAIAKVGLQKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEQKRRAAKIPSS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36733977 36737881 - CrPI670011_05g025450.1 Cre05g2545 499058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2545 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 298 405 - -
Cre05g2545 423 Pfam Triose-phosphate Transporter family 118 404 IPR004853 -
Cre05g2545 423 PANTHER SOLUTE CARRIER FAMILY 35 112 405 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cre05g2545 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 155 253 - -
Cre05g2545 423 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 116 414 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1940 Cre-Chr4:36917519 Cre05g2545 Cre-Chr5:36733977 6.60E-149 dispersed
Cre05g1573 Cre-Chr5:24232818 Cre05g2545 Cre-Chr5:36733977 1.20E-62 dispersed
Cre05g2545 Cre-Chr5:36733977 Cre10g0767 Cre-Chr10:7485072 3.30E-63 dispersed
Cre05g2545 Cre-Chr5:36733977 Cre04g1827 Cre-Chr4:36055411 7.20E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2545 K15283 - csv:101221040 711.449