Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2550 ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCAACCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAGAAGGCTTGAATACAATTATGGGATCACACATCAGAAGCGGGAGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGGAAGGTCTGAATTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTAACTCTAATGGAGGACTAGAAATGAAAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATCTGCAAGAAGGTTAAATTGAAACTGTCTGTTCATCGGGCTCTTATGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCACGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAATACCACTACCAATTCCATCTCTATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGATACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATGGGATTAA 1359 42.6 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSTRVAEKQRERSLKFQVPTERRRSKRDLESEVGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENRRLEYNYGITHQKREFIEENQSDIPERVREAAMCLMMMSKAPRFSGLEGLNSAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALMDEEYKKPDFKFGVRVGRASADILKNSMKTKKNDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGRWD 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36775958 36777316 + CrPI670011_05g025500.1 Cre05g2550 499063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2550 452 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Cre05g2550 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cre05g2550 452 MobiDBLite consensus disorder prediction 337 373 - -
Cre05g2550 452 MobiDBLite consensus disorder prediction 42 65 - -
Cre05g2550 452 Gene3D Classic Zinc Finger 1 69 - -
Cre05g2550 452 SUPERFAMILY beta-beta-alpha zinc fingers 98 412 IPR036236 -
Cre05g2550 452 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 133 - -
Cre05g2550 452 MobiDBLite consensus disorder prediction 42 78 - -
Cre05g2550 452 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cre05g2550 452 SMART c2h2final6 9 31 IPR013087 -
Cre05g2550 452 SMART c2h2final6 390 412 IPR013087 -
Cre05g2550 452 SMART c2h2final6 97 119 IPR013087 -
Cre05g2550 452 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cre05g2550 452 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cre05g2550 452 MobiDBLite consensus disorder prediction 175 209 - -
Cre05g2550 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Cre05g2550 452 Pfam C2H2-type zinc finger 390 412 IPR013087 -
Cre05g2550 452 Pfam C2H2-type zinc finger 9 31 IPR013087 -
Cre05g2550 452 Pfam C2H2-type zinc finger 99 120 IPR013087 -
Cre05g2550 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cre05g2550 452 MobiDBLite consensus disorder prediction 337 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2550 Cre-Chr5:36775958 Cre07g1092 Cre-Chr7:18033509 8.40E-12 dispersed
Cre01g1527 Cre-Chr1:28495357 Cre05g2550 Cre-Chr5:36775958 3.20E-27 wgd
Cre05g2550 Cre-Chr5:36775958 Cre06g2442 Cre-Chr6:32278909 1.50E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53782 PF13912 zf-C2H2_6 6.30E-09 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2550 - - - 0.0