Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2550 ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCAACCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAGAAGGCTTGAATACAATTATGGGATCACACATCAGAAGCGGGAGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGGAAGGTCTGAATTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTAACTCTAATGGAGGACTAGAAATGAAAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATCTGCAAGAAGGTTAAATTGAAACTGTCTGTTCATCGGGCTCTTATGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCACGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAATACCACTACCAATTCCATCTCTATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGATACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATGGGATTAA 1359 42.6 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSTRVAEKQRERSLKFQVPTERRRSKRDLESEVGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENRRLEYNYGITHQKREFIEENQSDIPERVREAAMCLMMMSKAPRFSGLEGLNSAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALMDEEYKKPDFKFGVRVGRASADILKNSMKTKKNDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGRWD 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36775958 36777316 + CrPI670011_05g025500.1 Cre05g2550 499063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2550 452 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Cre05g2550 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cre05g2550 452 MobiDBLite consensus disorder prediction 337 373 - -
Cre05g2550 452 MobiDBLite consensus disorder prediction 42 65 - -
Cre05g2550 452 Gene3D Classic Zinc Finger 1 69 - -
Cre05g2550 452 SUPERFAMILY beta-beta-alpha zinc fingers 98 412 IPR036236 -
Cre05g2550 452 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 133 - -
Cre05g2550 452 MobiDBLite consensus disorder prediction 42 78 - -
Cre05g2550 452 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cre05g2550 452 SMART c2h2final6 9 31 IPR013087 -
Cre05g2550 452 SMART c2h2final6 390 412 IPR013087 -
Cre05g2550 452 SMART c2h2final6 97 119 IPR013087 -
Cre05g2550 452 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cre05g2550 452 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cre05g2550 452 MobiDBLite consensus disorder prediction 175 209 - -
Cre05g2550 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Cre05g2550 452 Pfam C2H2-type zinc finger 390 412 IPR013087 -
Cre05g2550 452 Pfam C2H2-type zinc finger 9 31 IPR013087 -
Cre05g2550 452 Pfam C2H2-type zinc finger 99 120 IPR013087 -
Cre05g2550 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cre05g2550 452 MobiDBLite consensus disorder prediction 337 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2550 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2550 Cre-Chr5:36775958 Cre07g1092 Cre-Chr7:18033509 8.40E-12 dispersed
Cre01g1527 Cre-Chr1:28495357 Cre05g2550 Cre-Chr5:36775958 3.20E-27 wgd
Cre05g2550 Cre-Chr5:36775958 Cre06g2442 Cre-Chr6:32278909 1.50E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g59 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02400 Cam05g2576 Cec05g2610 Cco05g2648 Clacu05g2579 Cmu05g2433 Cre05g2550 . Cone19ag0908 Cone6ag0540 Cone9ag0550 Lsi04g00370 . . Cme10g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012570 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53782 PF13912 zf-C2H2_6 6.30E-09 CL0361 Cre TF