Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2555 ATGGCGCGGCGACTTTCATTCCCCGCGTTTTGTCTATGCCTTCTCTCTTTCTCTCTGTTGAACGATCCTATTCTCTGTAAAACCCTTAAACGTGATGTGAAAGCATTGAATGAGATCAAGGCTTCTCTTGGCTGGAGAGTGGTGTATTCTTGGGTTGGAGACGATCCGTGTGGCGATGGTGATCTGCCTCCTTGGTCTGGTGTCACTTGTACTACTCAAGGAGATTATAGAGTGGTTACTAAATTGGAAGTTTATGCGGTTTCGATCGTTGGCCCGTTTCCCACTGCTGTAACCAATCTCTTGGATCTTACTAGGCTTGATTTTCACAATAACAAGTTGACTGGACCAATTCCTCCTCAAATTGGACGGTTGAAGCGTCTCCAGATACTTAACTTGAGATGGAATAAGCTGCAAGATGTCATACCTCCTGAAATTGGTGAACTCAAGAGTTTAACTCATTTGGATGTTGGTAACAATCATTTGGTCGGCACCATTAGGGAACTCATACGCGTTGATGGCTGCTTTCCATCTCTTCGCAACTTGTATCTTAATGATAATTATTTTACTGGAGGAGTTCCAGCTCAACTTGCAAACTTGACAAACTTGGAAATCTTGTATTTATCACACAACAAGATGTCCGGAATAATTCCTGCTGAATTAGCCCGCATGCCAAGACTTACTTATTTATTCTTGGACTACAACCAATTTAGTGGGAGAATCTCAGATGCTTTTTACAAACATCCATTATTGAAAGAGATGTTCATCGAGGGCAATGCTTTTAGGCAAGGTGTTAAGCCAATAGGCTTTCACAAAGTTCTTGAAGTTTCAGACACAGATTTCCTTGTTGTCCAGTCTCAAGATTCTCTCATCAAACTTAAAATGGCAACAATGGCCTCCAAAGTCTTGTTCCTCGTTCTAATTTGCTTCTTTTCATTTTCATCTTCCATTTTAGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACTGACAACGATTTCATTTGTGCTACTATAGATTGGTGGCCTTCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCGTTCCTAATTTGGATCTTCAGAACGTTATCTTAACCAAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGATCACTTCAAGATCAAATCATTTACAGAGTTGGAAACTCGGTGAAGAAGTGTCCTCAAATGAAGAAACAGAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTTACCATGGAAAGATGGGATGATTTTAATGAGCTATTCAACAAAACATCAGCTCGGGTTACGTTTGGTTTGAATGCTCTGATGGGTAAAACACCAGCCAATGATGGAAGTATCAACTGGGTTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTGGGAAATGAGCTTTGTGCGAGCGGAGTTTCGGCAAGGCTTGAGCCAGATCAATATGGTAAAGATCTGACTCTAATGAGAAAAGTAGTTGAAGAGGTTTATCCTGATGCCAACAACAGACCCAAAATTCTTGGACCAGCGGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTTCAAAACACTGCCCCAAATGTTGTGGATGGAGTCACTCACCATATTTACAATCTTGGAGCAGGTGTTGATCCTACTCTTATAAATAAGGTTCAAGACCCTTATGTTTTGGACCAAATTGCTCAAACTTTTAAGGAAGCTATGGAAGTTTCACAGAGCTTTGGGCCATGGTCTAAGCCTTGGGTTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCCAATGGATTCTGGTATTTGGATCAACTGGGGATGACTGCCACATTCAATCATCAGGTTTATTGCAGACAAGCCTTGATTGGTGGAAACTATGCTTTGCTTAATACCACTAGTTTCATCCCTAACCCTGATTATTATAGCGCTCTGCTATGGCACAGATTAATGGGAAAGAAGGTCCTGTCAGCATCCCACGACAGCTCTCCATACCTTCGTGTTTATTCTCACTGCACCAAAAACAACGAAGGCGTTACAGTGCTTCTAATCAACATGTCAAATTCGACCATATTTGATGTAAATATTGTAAACGACAGAAATGTTTATCCAAACTTGATGATAGGCAGCAAATTAAAGGCAAGAGAAGAGTACCATTTAACTCCCAAAGACGGCAATATTCAAAGCGACGTCATGCTTTTGAATGGAACTCCTCTTCAACTTACTCCAACCTTGGACATTCCCGACATGTCGCCCAAGCTCGTCGATCCCACTTCCGCTGTGTCGGTTGCCCCTGATTCTTACGTCTTTGTCTCCATCAAAGACTTCAAAGCTCCTGCTTGCGCCTAA 2445 41.68 MARRLSFPAFCLCLLSFSLLNDPILCKTLKRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCTTQGDYRVVTKLEVYAVSIVGPFPTAVTNLLDLTRLDFHNNKLTGPIPPQIGRLKRLQILNLRWNKLQDVIPPEIGELKSLTHLDVGNNHLVGTIRELIRVDGCFPSLRNLYLNDNYFTGGVPAQLANLTNLEILYLSHNKMSGIIPAELARMPRLTYLFLDYNQFSGRISDAFYKHPLLKEMFIEGNAFRQGVKPIGFHKVLEVSDTDFLVVQSQDSLIKLKMATMASKVLFLVLICFFSFSSSILAEFVKVSVKGVTTIAETDNDFICATIDWWPSNKCDYGQCPWGKAGVPNLDLQNVILTKAIKEFNPLRIRVGGSLQDQIIYRVGNSVKKCPQMKKQSDGLFGFSKGCFTMERWDDFNELFNKTSARVTFGLNALMGKTPANDGSINWVGDWDPRNARDFIRYTASKGYKIDSYELGNELCASGVSARLEPDQYGKDLTLMRKVVEEVYPDANNRPKILGPAGFFDKEWFKTFLQNTAPNVVDGVTHHIYNLGAGVDPTLINKVQDPYVLDQIAQTFKEAMEVSQSFGPWSKPWVGESGGAYNSGGKTVSHTFANGFWYLDQLGMTATFNHQVYCRQALIGGNYALLNTTSFIPNPDYYSALLWHRLMGKKVLSASHDSSPYLRVYSHCTKNNEGVTVLLINMSNSTIFDVNIVNDRNVYPNLMIGSKLKAREEYHLTPKDGNIQSDVMLLNGTPLQLTPTLDIPDMSPKLVDPTSAVSVAPDSYVFVSIKDFKAPACA 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36795402 36803248 + CrPI670011_05g025550.1 Cre05g2555 499068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2555 814 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515(InterPro)
Cre05g2555 814 Pfam Leucine rich repeat 176 236 IPR001611 GO:0005515(InterPro)
Cre05g2555 814 SUPERFAMILY L domain-like 32 269 - -
Cre05g2555 814 SMART LRR_typ_2 223 246 IPR003591 -
Cre05g2555 814 SMART LRR_typ_2 124 148 IPR003591 -
Cre05g2555 814 SMART LRR_typ_2 199 222 IPR003591 -
Cre05g2555 814 FunFam heparanase-like protein 3 358 681 - -
Cre05g2555 814 Gene3D Ribonuclease Inhibitor 25 295 IPR032675 -
Cre05g2555 814 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Cre05g2555 814 FunFam Leucine-rich repeat (LRR) family protein 31 145 - -
Cre05g2555 814 SUPERFAMILY (Trans)glycosidases 334 683 IPR017853 -
Cre05g2555 814 Gene3D Glycosidases 360 681 - -
Cre05g2555 814 PANTHER HEPARANASE-RELATED 320 814 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Cre05g2555 814 FunFam Leucine-rich repeat receptor protein kinase EMS1 173 266 - -
Cre05g2555 814 Pfam Glycosyl hydrolase family 79, N-terminal domain 322 639 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2555 Cre-Chr5:36795402 Cre11g0824 Cre-Chr11:5463341 4.40E-136 dispersed
Cre01g0263 Cre-Chr1:1966580 Cre05g2555 Cre-Chr5:36795402 3.00E-46 transposed
Cre01g1532 Cre-Chr1:28535646 Cre05g2555 Cre-Chr5:36795402 1.70E-160 wgd
Cre05g2555 Cre-Chr5:36795402 Cre06g2448 Cre-Chr6:32304148 4.50E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2555 K07964 - csv:101214214 932.939