Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2563 ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGACTTCTATGGAGTCACTCTTCAGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGACTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCTGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCATTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACATCCTTGCCGGTCGAGAAGACTAAAGATCAGCCGATGCAACCTCCGTTCCAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACCGAATAAGCGGGCAAAGGATGTCGGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCGGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACGAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCGAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATGGTTACTGAGAAAAAATTTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTATTAAAGGAAGAACAAATAACATAG 1476 46.07 MGDDDEQPPPPPPSKSLRPTINLPPRTSMESLFSGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVTAVPPSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDQPMQPPFQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQPNKRAKDVGNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNMVTEKKFSSNNTDPGNSRQQPAGLLLLKEEQIT 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36872689 36875340 + CrPI670011_05g025630.1 Cre05g2563 499076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2563 491 FunFam WRKY transcription factor 33 364 430 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 1 36 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 448 491 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 312 326 - -
Cre05g2563 491 Gene3D WRKY domain 362 438 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 Gene3D WRKY domain 184 257 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 MobiDBLite consensus disorder prediction 295 360 - -
Cre05g2563 491 SMART WRKY_cls 197 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 SMART WRKY_cls 377 436 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 MobiDBLite consensus disorder prediction 154 208 - -
Cre05g2563 491 FunFam WRKY transcription factor 182 257 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 1 19 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 154 195 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 448 477 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 247 281 - -
Cre05g2563 491 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 MobiDBLite consensus disorder prediction 328 352 - -
Cre05g2563 491 Pfam WRKY DNA -binding domain 378 435 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 MobiDBLite consensus disorder prediction 262 281 - -
Cre05g2563 491 SUPERFAMILY WRKY DNA-binding domain 196 256 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 ProSiteProfiles WRKY domain profile. 198 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2563 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 127 461 IPR044810 GO:0003700(InterPro)
Cre05g2563 491 MobiDBLite consensus disorder prediction 20 34 - -
Cre05g2563 491 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2563 Cre-Chr5:36872689 Cre10g0629 Cre-Chr10:5852646 9.20E-73 dispersed
Cre06g2110 Cre-Chr6:28904915 Cre05g2563 Cre-Chr5:36872689 1.10E-41 transposed
Cre10g2178 Cre-Chr10:36326157 Cre05g2563 Cre-Chr5:36872689 8.20E-58 transposed
Cre11g0945 Cre-Chr11:6767412 Cre05g2563 Cre-Chr5:36872689 3.00E-119 wgd
Cre02g2227 Cre-Chr2:35905384 Cre05g2563 Cre-Chr5:36872689 9.70E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53783 PF03106 WRKY 8.40E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2563 - - - 0.0