Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2573 ATGAAGGATATTGAGAATCAAGTTGGAGATATTGACAGATCACGGCTACATGACCACAGTCACCTTTCCAAGACTTGTTCCCACAGGAAGTTCCAAGAAATATCAGAGATTGAGATGACTTTTCTTAGAAAACTTGATGAAGAGCTCAACAAGGTCAATTCCTTCTACAAGGAGAATGTAGAGGCTGTAACCAAAGAAGCAAGCGTTTTAAGTAAACAAATGGAGACTTTGATTGCACTGCGAAGGAAGATGGAGATCTCCCCTCTGACTGAAAGACACGATTCTCATGCTGAAGTTTCTACAATCCCCTTAAGCACCACTTTGCAAACGCCTTGTCCTTCAGGAAGTGTGCACTTGGATTCAGTGGTTGAAATGGATGCCAACAATCAGCGTGAACAAAAAGAGTCTAATTGGGGTTCAGAACTGGATCAAGTTCATACAGAAGTAAGTAGCAGTAAACATTTAGAAAAAGTCACAACGCTGGAAAACAACCAATATCCCCAAGAAATTCTTAAGCATGTGAAAGTCGTCGATGTGTTCAGCTCTCGTAAATCTACAGCGAAAGATATTTGCAAGAATTTTGAGGAGGATGATTTGGATGTTGATCAAGATGACCGAAGTAAGATTGAAGAACAGTTGAAAAAAGCATTTGCTGAATTTTACCAGAAGCTTCATTCGTTAAAGCAATATAGTTTTATGAACCTGTCAGCATTTGCGAGAATCATGAAAAAGTATGAGAAGGTGTCATCAAAGGTAGCAGCCAAGTCATACATGGAAATTGTGGATAATTCATACCTTGGAAGTTCAGATGAGGTTGCTGATCTCATGAAGATGGTGGAAATTACTTTTATCAAGAACTTTTCAAACTCAAATTATACAGAAGCCATGAAGCTTTTGAAGCCAAAAACTAAAAGAGAAAAACACAGCGTGACATTTTCTTCAGGCTTCCTATCTGGTTGTGCGGTGGCACTATTTGTGGCAACTGTTTTGAAAATAGTATCTCAAAAATTGATGGAGAGGGAAGATGGTACTCATTACATGGAAAATATATTTCCACTTTACAGTCTGTTTGGCTTTGTTGTCCTACACATGCTCATGTATGCAGCAGACTTATACTTCTGGAGATGTTGTCGAGTTAACTATCCTTTTATCTTTGGTTCCAAGAGAGGAACTGAATTGGGTTGGCAAGAAGTTTTCCTGCTTGGTGCTGGTTTTGCAGTACTTGCATCGGCCAGCTTCCTGGCAAACTTATACTTGGACAGGGACCCCAGCACTCAAAAGTATAGAACAGAAGCTGAGAAGGTTCCTTTAGGCACAACAGCACTTATTCTTCTCATCGCCTTTTGCCCATTCAACATTCTATACAAGTCAAGTCGCTTTTTCTTCATCCGCTGTATCCTACGCTGTATATCTGCTCCTCTGTGCAAGGTTAAGTTTCCAGATTATTTTTTGGCAGATCAGCTTACTAGTCAGGTACAAGCTTCAAGATGTATTGTGCTGTATATTTGCTACTATGGTTTAGGAGAATACTCAAGGAAGCAAAACAAGTGCCACACACATGGTGTCTACAACACTCTCTCCTTCATTATTGCTGTCATACCATTTTGGCTGCGGTTCTTACAGTGCGTCCGTCGTTTACTTGAAGAAAAAGATTCAATGCATGGCTACAATGCTCTTAAGTACCTCTCGACAATTGTTGCTGTCCTCATTAGAACTGCTTGTGAATTAAGAAAAGGCGCTACCTGGATGGTGTTAGCCTTGATTAGTTCCGCAGTTGCCGTGTTGATGAATACATACTGGGACATCGTTGTTGACTGGGGACTTCTGCGAAAACACTCAAAGAACAAGTACTTGAGAGACCGGCTTTTAGTATCCAAGAAGTCCGTCTATTTTGCAGCGATGATATTAAATATACTATTGAGAATTGCTTGGATCCAGTTGGTGCTAGCATTCAACTTGCGTTCATTTCAAAAGGTTGCTGCGACTACATTGATATCTTGCTTGGAAATCATTCGCCGTGGTCTTTGGAACTTCTTCAGTTTGGAGAACGAGCATCTGAACAACGTTAACAAGTATCGATCATTCAACCGGCGGTGGAACGACGAACGATTCCGCCTTAACAAACCTAGCGACATCAATCCGATTGCTACTTCGGCACCGACTAGGATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACTAAAACCCTGGAAGATCGAGCACAACCGGGTTCCCCAAATCACTCTGAGGAAAAATCTTCTGACGAATCAGGTCAGTCGGGAAATATTCCTGAAAGTGGAGATGGAGATGAAGAAGGAGAGGAGCTAGAAGATGAAGAGGAGGGGGAATGCGGGTTTTGCTTGTTTATGAAAGGGGGTGGTTGCAAAGATAGCTTCATAGAGTGGGAGAAGTGCATTGAGGAAGCGGAGAAGAACAAGGAGGATATTGTAGAGAAGTGCTTTGAAGTGACTGGGGCTCTGAAGAAATGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTGAAGGCGGAGAAAATGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCAAATGCTACCCAGCAAAATACGAATTCCAAAGACCTGGAGGTAAATGCGGGCTCCGAGAATTTGGAAGAACAGAAGGCCTCTGCGGGAGAAAGAGGTGGGAGATATATCTCAGGTGAAAGGGTTCAGGCTGTTAGCGTTTTCCGCTTTCAGATTAAGCCATTGGTTTCTCCTCCCCCTTTTGTAGTGAACGATTCAAATTTCTTGCCGGAGAAAATAGAATGCCTTGATAATATGGTGTATGATTTGTTATAG 2856 42.19 MKDIENQVGDIDRSRLHDHSHLSKTCSHRKFQEISEIEMTFLRKLDEELNKVNSFYKENVEAVTKEASVLSKQMETLIALRRKMEISPLTERHDSHAEVSTIPLSTTLQTPCPSGSVHLDSVVEMDANNQREQKESNWGSELDQVHTEVSSSKHLEKVTTLENNQYPQEILKHVKVVDVFSSRKSTAKDICKNFEEDDLDVDQDDRSKIEEQLKKAFAEFYQKLHSLKQYSFMNLSAFARIMKKYEKVSSKVAAKSYMEIVDNSYLGSSDEVADLMKMVEITFIKNFSNSNYTEAMKLLKPKTKREKHSVTFSSGFLSGCAVALFVATVLKIVSQKLMEREDGTHYMENIFPLYSLFGFVVLHMLMYAADLYFWRCCRVNYPFIFGSKRGTELGWQEVFLLGAGFAVLASASFLANLYLDRDPSTQKYRTEAEKVPLGTTALILLIAFCPFNILYKSSRFFFIRCILRCISAPLCKVKFPDYFLADQLTSQVQASRCIVLYICYYGLGEYSRKQNKCHTHGVYNTLSFIIAVIPFWLRFLQCVRRLLEEKDSMHGYNALKYLSTIVAVLIRTACELRKGATWMVLALISSAVAVLMNTYWDIVVDWGLLRKHSKNKYLRDRLLVSKKSVYFAAMILNILLRIAWIQLVLAFNLRSFQKVAATTLISCLEIIRRGLWNFFSLENEHLNNVNKYRSFNRRWNDERFRLNKPSDINPIATSAPTRMSTSESKLQDAESNAAATKTLEDRAQPGSPNHSEEKSSDESGQSGNIPESGDGDEEGEELEDEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKDLEVNAGSENLEEQKASAGERGGRYISGERVQAVSVFRFQIKPLVSPPPFVVNDSNFLPEKIECLDNMVYDLL 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36951933 36960007 - CrPI670011_05g025730.1 Cre05g2573 499086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2573 951 ProSiteProfiles SPX domain profile. 1 259 IPR004331 -
Cre05g2573 951 MobiDBLite consensus disorder prediction 773 787 - -
Cre05g2573 951 MobiDBLite consensus disorder prediction 710 787 - -
Cre05g2573 951 Pfam GCK domain 788 858 IPR012891 -
Cre05g2573 951 Pfam SPX domain 28 259 IPR004331 -
Cre05g2573 951 Gene3D - 772 848 - -
Cre05g2573 951 SMART GCK_2 788 862 IPR012891 -
Cre05g2573 951 MobiDBLite consensus disorder prediction 711 749 - -
Cre05g2573 951 MobiDBLite consensus disorder prediction 871 897 - -
Cre05g2573 951 Pfam EXS family 350 686 IPR004342 GO:0016020(InterPro)
Cre05g2573 951 ProSiteProfiles EXS domain profile. 518 713 IPR004342 GO:0016020(InterPro)
Cre05g2573 951 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 23 696 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0654 Cre-Chr1:5983390 Cre05g2573 Cre-Chr5:36951933 5.60E-165 dispersed
Cre05g2491 Cre-Chr5:36302457 Cre05g2573 Cre-Chr5:36951933 6.40E-75 dispersed
Cre05g2572 Cre-Chr5:36944613 Cre05g2573 Cre-Chr5:36951933 6.50E-180 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193