Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2607 ATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACGACGACAATAACAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACCGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGGTCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGGCGGGTGGTGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCGAATAATCCTGATCAATCATAG 1056 49.72 MDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTITTTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37152907 37153962 + CrPI670011_05g026070.1 Cre05g2607 499120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2607 351 MobiDBLite consensus disorder prediction 221 239 - -
Cre05g2607 351 MobiDBLite consensus disorder prediction 26 60 - -
Cre05g2607 351 MobiDBLite consensus disorder prediction 1 79 - -
Cre05g2607 351 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 319 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre05g2607 351 Pfam TCP family transcription factor 65 178 IPR017887 -
Cre05g2607 351 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Cre05g2607 351 MobiDBLite consensus disorder prediction 209 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2607 Cre-Chr5:37152907 Cre09g1714 Cre-Chr9:35311297 2.90E-28 dispersed
Cre11g1770 Cre-Chr11:29315693 Cre05g2607 Cre-Chr5:37152907 1.00E-37 transposed
Cre01g1570 Cre-Chr1:28832522 Cre05g2607 Cre-Chr5:37152907 1.50E-43 wgd
Cre05g2607 Cre-Chr5:37152907 Cre06g2493 Cre-Chr6:32663957 2.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53792 PF03634 TCP 3.80E-38 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2607 - - - 0.0