Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2625 ATGGCTATGCACCGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGTATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGACGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCCGAAGTAGGCCAGTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGATGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGATCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCACGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.42 MAMHRLLLTLSLLATTVFADIGNFDDYWKARAVDAEQAAADAFEPNPETVTNSFNAEVGQLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37313946 37315504 - CrPI670011_05g026250.1 Cre05g2625 499138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2625 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570(InterPro)
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cre05g2625 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cre05g2625 432 PANTHER PECTATE LYASE 18-RELATED 19 429 IPR045032 GO:0030570(InterPro)
Cre05g2625 432 Pfam Pectate lyase 170 348 IPR002022 -
Cre05g2625 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Cre05g2625 432 SMART amb_all 157 354 IPR002022 -
Cre05g2625 432 Gene3D - 82 425 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2625 Cre-Chr5:37313946 Cre06g1543 Cre-Chr6:10356445 3.10E-133 dispersed
Cre08g0841 Cre-Chr8:21488235 Cre05g2625 Cre-Chr5:37313946 1.90E-191 transposed
Cre01g1583 Cre-Chr1:28921540 Cre05g2625 Cre-Chr5:37313946 6.10E-64 wgd
Cre01g1327 Cre-Chr1:26471749 Cre05g2625 Cre-Chr5:37313946 6.10E-177 wgd
Cre10g1623 Cre-Chr10:30316806 Cre05g2625 Cre-Chr5:37313946 4.30E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2625 K01728 - csv:101206497 821.617