Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2627 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGCAGAAGAACAACAAGGAACAAGTTGAAACTGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTAGAGACATATCTTCAACAAACACAAGTATGAGTAATGCAGAGAGTAATTCATCAACTTCCAAATTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTGAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCCCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCACGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCTGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCCAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAGCATAACCTTGTCGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGATCCTAGGCTTGAAGGTCATTTCTCAATAAAAGGTGCCCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAACGGCTACCACACAGCAGCTGGACCGGTTCCAAAGAATGGGCAGCAACTACGCAGCTATTCAGTCGCGAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCGAAACCCAATGTCAAAGCCTAA 1380 43.55 MEVIAEDGKVESREVRESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKTMQADRIRSSPMARNGYHTAAGPVPKNGQQLRSYSVANGSHASPYHHQQPHPSPKPNVKA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37330419 37333869 - CrPI670011_05g026270.1 Cre05g2627 499140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2627 459 Pfam Protein tyrosine and serine/threonine kinase 135 342 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2627 459 Gene3D Transferase(Phosphotransferase) domain 1 217 411 - -
Cre05g2627 459 SMART serkin_6 131 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2627 459 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Cre05g2627 459 SUPERFAMILY Protein kinase-like (PK-like) 107 398 IPR011009 -
Cre05g2627 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2627 459 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Cre05g2627 459 ProSiteProfiles Protein kinase domain profile. 131 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2627 459 MobiDBLite consensus disorder prediction 69 103 - -
Cre05g2627 459 PANTHER OS01G0588500 PROTEIN-RELATED 97 400 IPR050823 -
Cre05g2627 459 MobiDBLite consensus disorder prediction 425 446 - -
Cre05g2627 459 FunFam Probable serine/threonine-protein kinase PBL8 217 406 - -
Cre05g2627 459 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Cre05g2627 459 MobiDBLite consensus disorder prediction 1 30 - -
Cre05g2627 459 MobiDBLite consensus disorder prediction 69 107 - -
Cre05g2627 459 MobiDBLite consensus disorder prediction 400 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0910 Cre-Chr4:27759976 Cre05g2627 Cre-Chr5:37330419 1.80E-119 dispersed
Cre05g2627 Cre-Chr5:37330419 Cre06g2002 Cre-Chr6:27557887 3.40E-130 dispersed
Cre01g0622 Cre-Chr1:5517637 Cre05g2627 Cre-Chr5:37330419 5.20E-185 wgd
Cre05g2627 Cre-Chr5:37330419 Cre08g0836 Cre-Chr8:21449392 2.60E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64177 PF07714 PK_Tyr_Ser-Thr 6.30E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2627 - - - 0.0