Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2645 ATGCCTTCTCCATCTCCTTCTCTTACTGTTTCCGCCATTGTTGTCTTCTTCCTTCATCTTTTTCCTCTCTTTCGTGTTGAGTCTTTGAGCTCTTCTTGTCCACCTTTCTCTTCCCAACTTCGTTTCCCTTTTTCCTCTGTTTCTGGTCATGGCCATCCTTCTTTTCAAGTGCGTTGCTCTTCTCCCCACTCTGTTATATCCATTAATGGGATTCCTTTTTCTCTGTTAAGTTTCAATATCACCTCCACCACTCTCCTTCTTTCCCCTCTTCCACTCAATGTCACTCCCACTCTCAAAGAATCGAATCACTCCTGTTCTTCTCTTCGTTCCTCCTCTATTCCCAGCCGTTCGATTGATTTCTCTGGCTCACCGTTTCGAATCTCAGATGGGTATTGTTCTAGACTCTCTCTTCTTCGACCCTGTTCGCCTCCGCATCTACCCAATTGCAGCCATTGCCCTTGGGAGTGTAATCTCATCAAGAAACCAGTTAATTTGCTCCATGGATGCGGCGTCGAGCGTCAGTCTGTGTCGGAGCAAGGTTGTCAGGAGGAGGTTTTGGAGTATTTGGACAGAATTCTTAGATTGGGGTTTGAAGTGGAGTGGGATAAAGATCAGGACCCTTACTTTATGAAATGTAATGATTGTGAAGCTAAAAAAGGTGTTTGTGGCTTCAATTCTTCAGACCCAGATAGGCAATTCATTTGCTACTATACTCGAACTCGATACTCATACCCTAATAGAATCGCGATTTTGTCCTCCGTCTTCGCTTTGATGTGCTTGTTATTGGTTTTTGCGGTAATGTTGGCCTTTTTCAGGTCGAGATGGTTGAGATCCCTCGCCATTGAAGTAGACCCAACAGCTCAGTTCCTCAGTCGCCATCGTTCACCGAATCTTCTCCCACCGGTTTTCCCCTACGAAGAACTCGAATCCTCAACCAATCGATTCGACCCAAAGAGGAAACTAGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGTCGATTAGTCGCCGTCAAGTATCTTCACAAGCACCACGCCACCGCCGCCGCGCCCTCCGGCAAGGCTTTCTTCACCAAATCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCCAATCTCGTTAGGTTACATGGGTATTGTAGTGATCCACGAGGGCTTATTCTAGTCTATGATTATGTCCCAAATGGGACACTCGCCGATCATCTCCATGGCCCTAAATGCTCGTACCGGAAGGGATCTCTGTCCTGGCAAGTGAGGATCGACATCGCTCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGTACCGCCGATTGTTCACAGAGACATTACGTCTTCCAACATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCAAGGCTGTTGGTTTTCTCAGATACGACGTCGTCTTCATCTGGGTATGTCTGCACCGGACCTCAGGGGACGCCCGGTTACTTGGATCCGGATTACCACCGGTCCTTCCGGTTGACGGAGAAAAGTGACGTGTACAGCTTTGGAGTGGTGTTATTGGAGCTGATTTCTGGTCTGAAAGCGGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGCTAGCGGATCTGGTAGTGTCCAAGATCCAAATGGGTCAGCTTCATCAGGTGGTGGACTCTGTTTTGGGCGTTGACGGCGAGGTAATCGACGGCGTTGAGGCCGTGGCGGAGCTGGCATTTCGATGCGTTGCGGCGGACAAAGACGACCGCCCAGACGCCAAGGAAATCGTGGAGGAACTCCGGCGGATTCGGAACGGCACACGTGGAGGGGTCCGGTCGTCGATTTCAAACGGGAGTGCTGACGTGGCTAGAAGTTGA 1890 48.62 MPSPSPSLTVSAIVVFFLHLFPLFRVESLSSSCPPFSSQLRFPFSSVSGHGHPSFQVRCSSPHSVISINGIPFSLLSFNITSTTLLLSPLPLNVTPTLKESNHSCSSLRSSSIPSRSIDFSGSPFRISDGYCSRLSLLRPCSPPHLPNCSHCPWECNLIKKPVNLLHGCGVERQSVSEQGCQEEVLEYLDRILRLGFEVEWDKDQDPYFMKCNDCEAKKGVCGFNSSDPDRQFICYYTRTRYSYPNRIAILSSVFALMCLLLVFAVMLAFFRSRWLRSLAIEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHATAAAPSGKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKCSYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVDGEVIDGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNGTRGGVRSSISNGSADVARS 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37468305 37470194 + CrPI670011_05g026450.1 Cre05g2645 499158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2645 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 31 613 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cre05g2645 629 Pfam Protein kinase domain 317 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2645 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 448 460 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2645 629 Pfam Wall-associated receptor kinase C-terminal 177 238 IPR032872 -
Cre05g2645 629 SUPERFAMILY Protein kinase-like (PK-like) 295 604 IPR011009 -
Cre05g2645 629 ProSiteProfiles Protein kinase domain profile. 315 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2645 629 Gene3D Transferase(Phosphotransferase) domain 1 400 619 - -
Cre05g2645 629 CDD STKc_IRAK 321 607 - -
Cre05g2645 629 FunFam Putative serine/threonine-protein kinase At1g18390 family 291 399 - -
Cre05g2645 629 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524(InterPro)
Cre05g2645 629 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2645 Cre-Chr5:37468305 Cre06g2335 Cre-Chr6:31278230 6.90E-73 dispersed
Cre05g2645 Cre-Chr5:37468305 Cre11g1222 Cre-Chr11:10355866 3.50E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64178 PF00069 Pkinase 6.40E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2645 - - - 0.0