Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2656 ATGTACCAAACATGGTATCCCTCCATTAGGAGCTTAAACGACAACATGGTAAATGATTTGCGATTGCCAAAGCAGTGTCGGTATAAGAGGCAGCGGAGTTACCGACACGTCGGTTGCGGATTGCTGCAGCAATTTAACCTTAAGGACAAAAATAACAGAGCGCGGCGGAGTAGACGGAGGAGAAGTAGTGGCTGCGGCGCGTCAAGGCACTTCTTCGACGGTCCCCGTCCGCCCGGCCTGCCGGCCCGCTCTGAAGAATTCATGGGCCAGCGAGCCTCCAGGACAAGGGGGCGGGCACTACTAACCAAGCCAAGCCTAGTTCTCGCCGATAGGCGCTGGAATTTCCGGCAACATTCGTTGGGCTTCCCTCTTCGGGGGCCTGCGTCCCGGCGTTTTTGTGCAATAAACCCCTCCGGCCGAAGACTAGTGGTAGGTGGTCCCGCGGAGCTTTCGGAGAAGGGTAGCCTAGTGTGTCTCATATTTGCTTTTCCGATCTCCTTTTTGCTTTTTGCTTTTCTGGCACTTCCAAGTTCTCGTGCTTTATCTTGTCAGACCCCTTTTTATGGTTTTCTTCCTCTTCCTGCAGCCTTTAGTTTTGAGTCGGAAATGAACGGGTCTCGCACGTGCTCGCTGTGTGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGGGGACGTCGGCGGGTTCATGTTGTTCGGAGTTAGGGTGACGACGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGAGCAGCCTCAAAGTCAAGACTCCAACAACGCTGATGCCGGATATGCTTCGGACGACGTCGTTCACCCATCTGACCGTGGCGGCGGCCGGAAGAGAGGGATTCCGTGGACAGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACGCGTACGTCAACTCAGGTTGCGAGTCATGCCCAGAAATACTTTCTCCGACGGAATAATTTCAATCGGAGACGCCGTAGGTCCAGCCTTTTCGATATCACTACTCACACATTCACGAGCTCATCCACGGAAGACGATTTGATATTTTCCGGCCACGAGGTTATGCCACCACCGCTGCCACCGTCACAGCCGCAAAAAGACACCCTTCCGGGAAATTTCCCGGTGAAAATCTATCCAGCGAAACCACCTCCTGCTGCCGTGGCCGGGGGCGCCGTTGATAGCAACGCCGTAGAGGGTACACTAACACTAAGTTCATCAAATTATCAGGCAAAGACTTGCAGTTCCAGAATTAGTCGTCCAATACCAATGCTTCGTCTATCTCCATACCCAAAGTTGGCTGAATTGAACATTAACGAGAGAACGCCAGAAGACCCTTTACCTCTAACTTTGAAGCTCTCAACTCCACACTCGGAGGAACAGTCACCGGCGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTTGCTTGA 1533 52.71 MYQTWYPSIRSLNDNMVNDLRLPKQCRYKRQRSYRHVGCGLLQQFNLKDKNNRARRSRRRRSSGCGASRHFFDGPRPPGLPARSEEFMGQRASRTRGRALLTKPSLVLADRRWNFRQHSLGFPLRGPASRRFCAINPSGRRLVVGGPAELSEKGSLVCLIFAFPISFLLFAFLALPSSRALSCQTPFYGFLPLPAAFSFESEMNGSRTCSLCGNNGHNSRTCPEGDVGGFMLFGVRVTTEGSNSFRKSVSMNNLSQYEQPQSQDSNNADAGYASDDVVHPSDRGGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTSTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSTEDDLIFSGHEVMPPPLPPSQPQKDTLPGNFPVKIYPAKPPPAAVAGGAVDSNAVEGTLTLSSSNYQAKTCSSRISRPIPMLRLSPYPKLAELNINERTPEDPLPLTLKLSTPHSEEQSPAAASQSSGSFQTMSGGGDSIDIVSVA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37546262 37552684 - CrPI670011_05g026560.1 Cre05g2656 499169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2656 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 287 341 IPR017930 -
Cre05g2656 510 MobiDBLite consensus disorder prediction 475 502 - -
Cre05g2656 510 SUPERFAMILY Homeodomain-like 287 342 IPR009057 -
Cre05g2656 510 NCBIfam myb-like DNA-binding domain, SHAQKYF class 288 339 IPR006447 GO:0003677(InterPro)
Cre05g2656 510 MobiDBLite consensus disorder prediction 460 510 - -
Cre05g2656 510 Gene3D - 291 343 - -
Cre05g2656 510 SMART sant 289 339 IPR001005 -
Cre05g2656 510 MobiDBLite consensus disorder prediction 255 270 - -
Cre05g2656 510 ProSiteProfiles Myb-like domain profile. 292 337 IPR001005 -
Cre05g2656 510 ProSiteProfiles SANT domain profile. 293 341 IPR017884 -
Cre05g2656 510 MobiDBLite consensus disorder prediction 255 290 - -
Cre05g2656 510 FunFam transcription factor MYB1R1 291 342 - -
Cre05g2656 510 ProSiteProfiles Zinc finger CCHC-type profile. 209 224 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre05g2656 510 MobiDBLite consensus disorder prediction 50 79 - -
Cre05g2656 510 CDD SANT 292 336 IPR001005 -
Cre05g2656 510 PANTHER TRANSCRIPTION FACTOR KUA1 206 384 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Cre05g2656 510 Pfam Myb-like DNA-binding domain 292 337 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2656 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2656 Cre-Chr5:37546262 Cre10g0497 Cre-Chr10:4114799 2.30E-34 dispersed
Cre09g0015 Cre-Chr9:468651 Cre05g2656 Cre-Chr5:37546262 2.90E-36 transposed
Cre01g1303 Cre-Chr1:26261713 Cre05g2656 Cre-Chr5:37546262 5.70E-36 wgd
Cre05g2656 Cre-Chr5:37546262 Cre06g2530 Cre-Chr6:32939380 4.50E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53797 PF00249 Myb_DNA-binding 7.50E-10 CL0123 Cre TF