Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2664 ATGGCCAGAAACTCCATCTTCTCCCGCCGCCGGAGGTCCGATCCTTTCGACGGTTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAACCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATGGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATACGAATTGCTAAAGAAAATTAAGGAATCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCGCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA 699 49.07 MARNSIFSRRRRSDPFDGLDRFTTSDSEVHVLAVDDNLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETSSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37620159 37621141 - CrPI670011_05g026640.1 Cre05g2664 499177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2664 232 MobiDBLite consensus disorder prediction 180 232 - -
Cre05g2664 232 Gene3D - 29 187 - -
Cre05g2664 232 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Cre05g2664 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 218 IPR045279 GO:0009736(InterPro)
Cre05g2664 232 MobiDBLite consensus disorder prediction 161 232 - -
Cre05g2664 232 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cre05g2664 232 CDD REC_typeA_ARR 31 153 - -
Cre05g2664 232 MobiDBLite consensus disorder prediction 161 179 - -
Cre05g2664 232 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
Cre05g2664 232 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2664 Cre-Chr5:37620159 Cre07g0902 Cre-Chr7:8148361 2.90E-37 dispersed
Cre09g1785 Cre-Chr9:36276213 Cre05g2664 Cre-Chr5:37620159 2.80E-39 transposed
Cre10g1736 Cre-Chr10:31659739 Cre05g2664 Cre-Chr5:37620159 1.30E-39 transposed
Cre05g2664 Cre-Chr5:37620159 Cre06g2534 Cre-Chr6:32991425 7.50E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53799 PF00072 Response_reg 1.30E-21 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2664 K14492 - csv:101209506 343.584