Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2672 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAAGAAGATTCTTCCGGCGTCTTCTCCGGCGAGACGCCGGGGTGTTCTTCCGACCTTGATTCTCCGGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGGGCTACCAATCTCCGTCGCTTGATGCGGCCGCTAGATTAGACTCTATTGCATGGATTCTTAAGGTTCAAGCGTATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTAGTTCACGCCGTTTGCCGCAAACAAATGGTTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACGATATGCAGGATGGAATTATTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCCTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCTGGAGATTTCATTGGATTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCGTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGGAAGAGATTGTGCTTGATAATAGCCGGAGAAACTCCCCCAAAATCATACCTCAGTTTAGAGTGACAGTTCGCACTAGAATGAGATCCAGCGACTTATCTTCCACCTACTCTTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGAGAAAGATTCCCAATGGGAGGGGAAACTAAAGGGAAAGAGGGGTTTGTTTGATTTTGAGGGAAATGGCAGAGCGTTGAATAAGTGGAGTCCATATGGATATCATAGTGTTAAATGTATTATTATGAGAATGGGCTCTCCCTCAAACCAGCTGGCTGGCCCCTCCGATCAGCTAACCTCCGGTGACCTCCTGCCGTGGCTGCTTTCATCTTAG 1191 46.43 MSVSISNCFSNLLCQEDSSGVFSGETPGCSSDLDSPACVEESISVFIKNERHFVPDYDCLSGYQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMEEIVLDNSRRNSPKIIPQFRVTVRTRMRSSDLSSTYSSSSSSSSSPNKRRKLNQTHLWVDDEKDSQWEGKLKGKRGLFDFEGNGRALNKWSPYGYHSVKCIIMRMGSPSNQLAGPSDQLTSGDLLPWLLSS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37693389 37697010 + CrPI670011_05g026720.1 Cre05g2672 499185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2672 396 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Cre05g2672 396 MobiDBLite consensus disorder prediction 295 320 - -
Cre05g2672 396 SUPERFAMILY Cyclin-like 157 275 IPR036915 -
Cre05g2672 396 Gene3D - 47 236 - -
Cre05g2672 396 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Cre05g2672 396 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Cre05g2672 396 FunFam D2/4-type cyclin 56 173 - -
Cre05g2672 396 PANTHER CYCLINS 37 268 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre05g2672 396 SMART Cyclin_C_2 175 311 IPR004367 -
Cre05g2672 396 Gene3D - 56 173 - -
Cre05g2672 396 Pfam Cyclin, C-terminal domain 175 285 IPR004367 -
Cre05g2672 396 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Cre05g2672 396 MobiDBLite consensus disorder prediction 295 317 - -
Cre05g2672 396 SMART cyclin_7 78 166 IPR013763 -
Cre05g2672 396 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0408 Cre-Chr1:3444174 Cre05g2672 Cre-Chr5:37693389 6.00E-124 dispersed
Cre04g0899 Cre-Chr4:27659000 Cre05g2672 Cre-Chr5:37693389 1.80E-23 dispersed
Cre05g2240 Cre-Chr5:34024661 Cre05g2672 Cre-Chr5:37693389 3.20E-38 dispersed
Cre05g2672 Cre-Chr5:37693389 Cre10g1170 Cre-Chr10:24034506 7.70E-54 dispersed
Cre05g2672 Cre-Chr5:37693389 Cre08g1092 Cre-Chr8:24046681 1.50E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2672 K18810 - csv:101209417 587.415