Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2689 ATGGCTGCGGAATATTCCGTCGAGTCGGCGGCCGATGCGGCGGCGAAGAAACCTGAAATTGAGAATGGGGTTTCCGCCTCACACCCCGATTGTATTTCCTCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTACCAGAACGTTTTGGTCTTTCAGTCATCAACTTATGGGAAGGTTCTGGTTTTGGATGGGGTGATTCAGCTTACTGAGAGAGATGAATGTGCTTACCAAGAGATGATCACCCACCTCCCACTTTGCTCAATTCCAAACCCCAAAAAGGTTCTAGTTATTGGTGGAGGAGATGGCGGTGTCTTACGAGAGGTGGCTCGTCATTCATCTGTTGAGCAGATAGATATCTGTGAAATTGACAAGATGGTAGTTGACGTTTCCAAAGAATTTTTCCCTCGCGTAGCTGTTGGGTATGAGGATCCTCGCGTCACTCTTCATGTTGGTGATGGCGTTGCATTTCTGAAGGCTGTTCCTGAAGGCACTTATGATGCAATTATAGTGGATTCTTCTGATCCTATTGGTCCTGCACAAGAGCTTTTTGAGAAGCCTTTTTTTGCTTCAGTTGCCAAAGCTCTTCGACCTGGAGGTGTTGTGTGTACTCAGGCAGAGAGCATCTGGCTTCACATGCATATCATTGAAGATATTGTTACAAACTGCCGCCAAATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCTACATATCCAAGTGGAGTGATTGGGTTTATGCTCTGCTCAACTGAGGGACCTTCTGTCGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAATGGTATCGACACCGCGAAGAGTCCGCTCAAGTTTTACAACTCCGAGGTGGGATCTGTTATCACCCTTCAAATTTTGTTTATATCATATTGA 963 45.79 MAAEYSVESAADAAAKKPEIENGVSASHPDCISSVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVSKEFFPRVAVGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPSVDFKHPVNPVEVNGIDTAKSPLKFYNSEVGSVITLQILFISY 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37842401 37844927 - CrPI670011_05g026890.1 Cre05g2689 499202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2689 320 NCBIfam spermidine synthase 39 307 IPR001045 GO:0003824(InterPro)
Cre05g2689 320 FunFam Spermidine synthase 1 90 318 - -
Cre05g2689 320 Pfam Spermidine synthase tetramerisation domain 38 92 IPR035246 -
Cre05g2689 320 CDD AdoMet_MTases 115 226 - -
Cre05g2689 320 Gene3D Spermidine synthase, tetramerisation domain 30 89 IPR037163 -
Cre05g2689 320 Pfam Spermine/spermidine synthase domain 95 282 - -
Cre05g2689 320 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 37 274 IPR030374 -
Cre05g2689 320 Gene3D Vaccinia Virus protein VP39 90 316 IPR029063 -
Cre05g2689 320 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 306 IPR029063 -
Cre05g2689 320 PIRSF Spermidine_synth 27 314 IPR030668 GO:0006595(InterPro)
Cre05g2689 320 FunFam Spermidine synthase 1 30 89 - -
Cre05g2689 320 Hamap Polyamine aminopropyltransferase [speE]. 38 319 IPR001045 GO:0003824(InterPro)
Cre05g2689 320 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 116 129 IPR030373 -
Cre05g2689 320 PANTHER SPERMIDINE/SPERMINE SYNTHASE 32 308 IPR001045 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2689 K00797 - - csv:101213410 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1068 Cre-Chr5:9939456 Cre05g2689 Cre-Chr5:37842401 6.90E-121 dispersed
Cre05g2689 Cre-Chr5:37842401 Cre09g2459 Cre-Chr9:43906522 3.40E-124 dispersed
Cre01g1279 Cre-Chr1:26054395 Cre05g2689 Cre-Chr5:37842401 1.20E-101 wgd
Cre05g2689 Cre-Chr5:37842401 Cre06g2556 Cre-Chr6:33172039 1.40E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106