Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2694 ATGAGGTTGAACGATGGGGTTCTGAAATCGCTTCTCCGGCTCTTCCCTTATTCTCTAGTCTCTAGGGCACAACGTACTCCAATTACTTCGTCGGAAAATCTGAAAGATAAGCCTGGAAGCTTTCAACTTCCTTGCGATCTTCTTTCGACTTCAATGGCGGATTCTTCCTCTTCCCCTGCGACTCTCGATTCAAATCCTCAAGCTGCCGAACCCGAAAACCCCAATTCACAGGCCAACAAACCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCGCTACCACCAACATCTCTTTCTCTCGGAATAAACCCTACCTTGCATCCACCCTTAGTGTCAACGCCGCAACCACCTCCTTCTCTATCGTATGCCCCCTCACCCTTATCCGGTGCGGTGGCCGTTCCTCCGACGGCACCATCTTTCCGGCCTGTGCCTCTCTCAGCTCATCACTTCTCGCCCATGCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCTGGTATGGCAAGTGGCGGCACGGGAGCAGTTCCAGTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGCGATGAGGCCGTACGCCACCATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCATTTCCTCTCCCTGCGTTTTGTCTCTTGATTGAATACGGTGAGAAAGGTTGGAAGGCTTCATATTGCTTAGAGAACTCCCAACTACAACTCCTTTTTTGGATTTTACTGGTAGTTATATTGGATACTGTCCCTGGATATTTGAATTGCCAGAAGCAGACCATGTTAGCACCTGAGTGTTCGTTCGCCTTGTTTCTAAGGTTATCTATGCATTCAGCTGCTGATAGTTTCCATTCCTATGCTGCCATCGTTTATATGCTTTGGATTTTGATGTTTTTCTTTATTTGTGCAGGAATTCCACGTTTCCCTTCTCCATATCCTGCTATGATTAGGACGCCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGCAATGCCACGACCTCCTATTCCTGGGATTCCTGGTGTGCGCCCAATCATCCCTCCTGTGGTTAGGCCTGCTGTGCTCCCAAGTGTTACACCAGCCGAACAACCACAAACTACTATTTATATTGGCCGAATTGCACAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAAATCCATCGGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGGGCACTACGGTTACTGACAAAGTTAAACATTGATGGACAAGAACTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAGAAACTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGAAGAAGCAGCCACAACGAATGTGGCTAGAAATGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATAACGATTCAGGGGAAAAGGATCTTGACATTGCCCGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCAGACCGCGTGGCGTCGGAAAAACTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTTATGACAACTGCTGATGTCTCTGGTAATTCAAGTGCGGAGCCATCTGCTAAATTGAAAGATGGTGAAGCTGACGCTGATGTTTTGAAACCTGATGCAGCTGACGATAGAAATGATGATGACACAACTAGTGACCATAAACAAACTAGTGAGCAAGACAAGCCTGAAACAAGCTCACCGGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGATAGGGAGAGGGATCTGAAAAGGGATAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAGGAGAGGGAACAACGAAGAAAGTTTGAGGAGGCGGAGCGACAGTATGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTATGATGAAGATGATGAGGATGACGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTCGAGAAAAGGAAGATGATTCGGTCGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACAGAAAGACCCGCTGAAACTTGTATCTGGTCAGATGTCGAATGTGAACGAGAAAACTATTCTTGCTGAAGAATCTGTTAATGAGATTAAAGTTATGGCTTCTGAACGTGAATCTGAGCTTGACTCTAGCTGTGATAACCATATAGGGGATGGGATCTTGCAAAATGGTAGTGGTGATGAACTAAGTACAATACCATCAGAGACTCGACATAGTGGAGGGTTGCCTGCAAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCAGTTTTCCATGAGGAGGAGGATGATGAAGCACAGAAGGAGAAAAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTACAGGCTGTTCAACCTGCCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCTGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGCCTGATGGTGAGAGGGAGCGAGGAAGGCGTTCCAGTGAAAAGTCAGGTCATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGATAGGGAGCGAGACCATGTTCTGGATAAAGTAAAAACACCGGATAACAAAAAACTTTTGGATGCGAAACAGTTGATTGATATGATTCCAAAGACAAAAGAGGAATTATTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACCACTCTTGTGGATTACATAGTTTCAAGTACTCAGGAACACGTAAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 3342 46.05 MRLNDGVLKSLLRLFPYSLVSRAQRTPITSSENLKDKPGSFQLPCDLLSTSMADSSSSPATLDSNPQAAEPENPNSQANKPESAASSFPPPQSLPPTSLSLGINPTLHPPLVSTPQPPPSLSYAPSPLSGAVAVPPTAPSFRPVPLSAHHFSPMPGTGMLNPSYPNPGVQPPGVSSVAAPAPGMASGGTGAVPVPVPQPMMAYQVPPGQVPNPAMRPYATMPNGFAAVPTATPQGAFPLPAFCLLIEYGEKGWKASYCLENSQLQLLFWILLVVILDTVPGYLNCQKQTMLAPECSFALFLRLSMHSAADSFHSYAAIVYMLWILMFFFICAGIPRFPSPYPAMIRTPFPPRPPGAMGMVPAMPRPPIPGIPGVRPIIPPVVRPAVLPSVTPAEQPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQNPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEAATTNVARNETSKPSAEDSKEDNDSGEKDLDIARSAVLSDEDRDADRVASEKLTNALEERLKSRPLPPPPLMTTADVSGNSSAEPSAKLKDGEADADVLKPDAADDRNDDDTTSDHKQTSEQDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRKAEEEQLQKQKDPLKLVSGQMSNVNEKTILAEESVNEIKVMASERESELDSSCDNHIGDGILQNGSGDELSTIPSETRHSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDDEAQKEKKMRPLVPIDYSAEELQAVQPASTGALPPNLAAAAEFAKRISNVNSKEEKPDGERERGRRSSEKSGHRDRNDEDTYRSKDENKTIDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37874714 37882214 - CrPI670011_05g026940.1 Cre05g2694 499207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2694 1113 FunFam RNA Binding Motif protein homolog 992 1108 - -
Cre05g2694 1113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 398 483 IPR000504 GO:0003723(InterPro)
Cre05g2694 1113 SUPERFAMILY PWI domain 1034 1101 IPR036483 -
Cre05g2694 1113 Pfam RNA recognition motif 400 469 IPR000504 GO:0003723(InterPro)
Cre05g2694 1113 MobiDBLite consensus disorder prediction 821 903 - -
Cre05g2694 1113 Gene3D - 391 511 IPR012677 -
Cre05g2694 1113 Coils Coil 703 730 - -
Cre05g2694 1113 Coils Coil 650 699 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 44 87 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 491 691 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 595 691 - -
Cre05g2694 1113 SUPERFAMILY RNA-binding domain, RBD 353 471 IPR035979 GO:0003676(InterPro)
Cre05g2694 1113 ProSiteProfiles PWI domain profile. 1016 1113 IPR002483 -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 30 129 - -
Cre05g2694 1113 Pfam PWI domain 1036 1099 IPR002483 -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 881 903 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 703 798 - -
Cre05g2694 1113 Gene3D PWI domain 992 1108 - -
Cre05g2694 1113 SMART rrm1_1 399 472 IPR000504 GO:0003723(InterPro)
Cre05g2694 1113 MobiDBLite consensus disorder prediction 937 992 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 110 124 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 520 566 - -
Cre05g2694 1113 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 52 1113 IPR053294 -
Cre05g2694 1113 SMART pwi_2 1029 1102 IPR002483 -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 491 511 - -
Cre05g2694 1113 Coils Coil 486 506 - -
Cre05g2694 1113 MobiDBLite consensus disorder prediction 703 790 - -
Cre05g2694 1113 Coils Coil 760 787 - -
Cre05g2694 1113 CDD RRM_RBM25 398 481 IPR034268 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2694 K12822 - - csv:101214372 1114.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47