Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2705 ATGTTCGAAGATTTCATGTTTCAGCGATTTGGTTCGGAAACGACTCCATGGGTGGATTTTATTCTCTCGGTGGTGATTGTTGAAGGTAGAGACAGAGAATGGGGCTTACCTGGTAAGACAACTATCCTCTACAAGCTCAAGCTTGGCGAGATCGTCACAACAATCCCTACCATCGGGTTTAATGTTGAGACTGTAGAGTACAAAAACATCAGCTTCACGGTCTGGGATGTTGGGGGTCAAGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTCATATTTGTTGTTGATAGCAATGACAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTTCTTCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACCGACAAGCTTGGTCTCCACTCTCTCCGCCAGCGTCACTGGTACATCCAGAGCACATGCGCCACCTCTGGAGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGGCATAA 573 46.95 MFEDFMFQRFGSETTPWVDFILSVVIVEGRDREWGLPGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37958823 37962177 - CrPI670011_05g027050.1 Cre05g2705 499218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2705 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 188 IPR027417 -
Cre05g2705 190 Gene3D - 36 190 IPR027417 -
Cre05g2705 190 SMART sar_sub_1 15 186 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g2705 190 FunFam ADP-ribosylation factor 1 24 190 - -
Cre05g2705 190 Pfam ADP-ribosylation factor family 38 186 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g2705 190 SMART arf_sub_2 18 190 - -
Cre05g2705 190 PRINTS GTP-binding SAR1 protein signature 128 149 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g2705 190 PRINTS GTP-binding SAR1 protein signature 83 108 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g2705 190 PRINTS GTP-binding SAR1 protein signature 56 80 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g2705 190 PANTHER ADP RIBOSYLATION FACTOR-RELATED 38 187 IPR024156 GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Cre05g2705 190 ProSiteProfiles small GTPase Arf family profile. 15 186 - -
Cre05g2705 190 NCBIfam small GTP-binding protein domain 38 166 IPR005225 GO:0005525(InterPro)
Cre05g2705 190 CDD Arf1_5_like 38 185 IPR045872 GO:0003924(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2705 K07937 - - gmx:100807631 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2705 Cre-Chr5:37958823 Cre09g0464 Cre-Chr9:4416334 3.70E-86 dispersed
Cre03g1102 Cre-Chr3:10514476 Cre05g2705 Cre-Chr5:37958823 1.30E-11 transposed
Cre05g0984 Cre-Chr5:9079670 Cre05g2705 Cre-Chr5:37958823 1.10E-21 transposed
Cre01g0545 Cre-Chr1:4738977 Cre05g2705 Cre-Chr5:37958823 1.50E-84 wgd
Cre10g1551 Cre-Chr10:29509664 Cre05g2705 Cre-Chr5:37958823 1.10E-84 wgd
Cre05g2705 Cre-Chr5:37958823 Cre08g1743 Cre-Chr8:29636656 3.70E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297