Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2709 ATGAACCATGTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTTTGACAGTTTCAAAAGACCAAACTCGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTAGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGTAATCAGATTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA 570 42.81 MNHVFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFFDSFKRPNSKFSEYEVEEGLIPATPPLVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTENCNQIEVHKDGKCFPRHSFLT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37994545 37995934 - CrPI670011_05g027090.1 Cre05g2709 499222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2709 189 FunFam Axial regulator YABBY 4 107 173 - -
Cre05g2709 189 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Cre05g2709 189 CDD HMG-box_SF 119 165 - -
Cre05g2709 189 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Cre05g2709 189 Gene3D High mobility group box domain 109 174 IPR036910 -
Cre05g2709 189 SUPERFAMILY HMG-box 104 160 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2709 Cre-Chr5:37994545 Cre09g2142 Cre-Chr9:40436043 3.60E-33 dispersed
Cre05g2709 Cre-Chr5:37994545 Cre08g1731 Cre-Chr8:29543392 1.30E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53803 PF04690 YABBY 6.30E-58 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2709 K25796 - csv:101211641 325.865