Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2711 ATGGTGAGGGCAGGGATGAAGGTCAATCATCAACTACAAGGGGTCGTGGTAATCACGGACAATACACAACTTACTAGATATATCATGATTAAGTTGGTGCGGTTCCCTCCAAGATTGAATGAAGGCCGAGCGACGAAAAGATCTGGAAGGTCAGTGGGAAGCTCTGCCTTATCCATCTTCTCCAACGAGAGGAGAGTGAAAGAAAGGGAAGGTACTGTAGCAATGGCAAGAATCCCATCATTGCCAGGCCTCAACCTATTCTCTTCACTCCCTTCACCTCCACCGCCTCACGATCCCTCACCCACTTCTTCTCCTTCAACACCCATTCCAATTCCCAAATACCCTCCTCCCAAATCCCGCACCCTTCGGACCAACAATCCTCCAAAACCTCCTAATCCTGCTCTCAAAACCTTCCACCGCCGCTCCAATTACTACAAGCCCGTCAAAGATGGAGTCATCTCATCCCACGGCGATCGCTCCGTCGTCATCGGCGATTCCGGTGTGTCGTATCTCCTCCCCGATGCTCCATTCGAGTTCCAATACAGTTACTCTGAGACCCCCAAAGTCAAGCCCATTGCAATTCGCGAACCAGCGTTTCTACCCTTTGCACCCCCGACGATGCCGAGGCCATGGACCGGCAAAGCTCCATTGAAGAGCTCGAAGAAGAAAATCCCTCTCTTCGATTCCTTCAATCCGCCCCCTCCTGGTACCAACGGAGTTAAGCAAGTCCAGATGCCTGGCCCGTTCCCGCTTGGCCAGTTTCCCAAGGAGGGGAAAAGCAGAGAGGAGATTCTTGGGGAACCCCTTAAGAATTGGGAGATTCGCATGCTGGTGAAACCCCATTTGTCACATAATCGCCAGGTTAATCTTGGAAGGGATGGACTTACGCATAATATGTTGGAACTGATACATTCGCATTGGAAGCGGCAACGTGTCTGTAAAGTTCGTTGCAAAGGTGTTCCCACAGTAGATATGGATAATATCTGCCATCATATCGAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTCGGTGGTGTATTATATCTATTCCGAGGTAGAAACTACAATTATCGTACTCGCCCTCAATACCCTGTAATGCTCTGGAAACCTGCAGCCCCTGTGTATCCAAAACTTATTCAAGAAGCTCCAGAAGGGTTAACAAAAGAGGAAGCTAATGTTCTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCCTTAGTGGATGACGTGAGGCATGCTTTTGAAGGAAGCATTTTGGTGAAGATTGATTGCACTGGCATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTTAAGGAATTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCAGTTATTTCAGACGATCGTTCTGCTCCACTTCCTACTCGGGTTAGCTCAAATGATTGTTTGGGTTCATCTGTCGAGTCTATTGAGAATGATGACCTCTTACAAGGCAAAAATCATACTATCAAAACTAGCCCGAAAATGAAGCTGCTATGGGAGCGTGCCATCGATTCAAACAAGGCATTGTTGCTAGATGAGATTGGTCTTGCTCCTGATGACCTTTTAGAGAAAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACTGAGCATTCTTATCCAGCATTTATCATGTCAAGTGAAGATGTCAGCAACCCAGTTGACAGCCCTGGAAGTCGGGATCAAAGCGAAGGTAACTACAACTCCGATGACGATGTAAGTTGGGAAGGCGACCTTTTTGATAATGTTGACCCGTCAGTCCCTTTAGGATCATTACCTGTTGATATTATAGCAAAGAAGCTGAGCCCTGAATAG 1893 46.01 MVRAGMKVNHQLQGVVVITDNTQLTRYIMIKLVRFPPRLNEGRATKRSGRSVGSSALSIFSNERRVKEREGTVAMARIPSLPGLNLFSSLPSPPPPHDPSPTSSPSTPIPIPKYPPPKSRTLRTNNPPKPPNPALKTFHRRSNYYKPVKDGVISSHGDRSVVIGDSGVSYLLPDAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTNGVKQVQMPGPFPLGQFPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANVLRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPLPTRVSSNDCLGSSVESIENDDLLQGKNHTIKTSPKMKLLWERAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFIMSSEDVSNPVDSPGSRDQSEGNYNSDDDVSWEGDLFDNVDPSVPLGSLPVDIIAKKLSPE 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38003411 38008390 + CrPI670011_05g027110.1 Cre05g2711 499224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2711 630 ProSiteProfiles CRM domain profile. 385 481 IPR001890 GO:0003723(InterPro)
Cre05g2711 630 MobiDBLite consensus disorder prediction 573 596 - -
Cre05g2711 630 MobiDBLite consensus disorder prediction 573 616 - -
Cre05g2711 630 Gene3D - 268 364 IPR035920 -
Cre05g2711 630 Pfam CRS1 / YhbY (CRM) domain 387 470 IPR001890 GO:0003723(InterPro)
Cre05g2711 630 Pfam CRS1 / YhbY (CRM) domain 269 352 IPR001890 GO:0003723(InterPro)
Cre05g2711 630 SMART CRS1_YhbY_2 269 352 IPR001890 GO:0003723(InterPro)
Cre05g2711 630 SMART CRS1_YhbY_2 387 470 IPR001890 GO:0003723(InterPro)
Cre05g2711 630 SUPERFAMILY YhbY-like 268 361 IPR035920 -
Cre05g2711 630 FunFam CRS2-associated factor 1, chloroplastic 268 363 - -
Cre05g2711 630 Gene3D - 387 483 IPR035920 -
Cre05g2711 630 ProSiteProfiles CRM domain profile. 267 363 IPR001890 GO:0003723(InterPro)
Cre05g2711 630 SUPERFAMILY YhbY-like 387 477 IPR035920 -
Cre05g2711 630 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 115 627 IPR044599 GO:0000373(InterPro)
Cre05g2711 630 MobiDBLite consensus disorder prediction 86 138 - -
Cre05g2711 630 MobiDBLite consensus disorder prediction 88 134 - -
Cre05g2711 630 FunFam CRS2-associated factor 1, chloroplastic 386 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2711 K27710 - - csv:101217796 977.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0277 Cre-Chr5:2568758 Cre05g2711 Cre-Chr5:38003411 6.70E-77 dispersed
Cre05g1590 Cre-Chr5:24830017 Cre05g2711 Cre-Chr5:38003411 1.50E-64 dispersed
Cre05g2711 Cre-Chr5:38003411 Cre11g0715 Cre-Chr11:4287368 9.20E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35