Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2714 | ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTTCCGCCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCGGAAGCGGAGGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGATGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAGTTTGAAGGAATGGATGGGCTTTCTTCTGATACTCGGGTCATAAAAATGTCGTCTTCCTTATTTTTCGATGGTGTACTTGACAGAGATGCAATAGAGGCTGTTGGCAAGTCGGGGCTTGGGGTAGCTTTAGCCGATACCTGTATTCGGGTTTTAAAATAG | 1083 | 46.08 | MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQFEGMDGLSSDTRVIKMSSSLFFDGVLDRDAIEAVGKSGLGVALADTCIRVLK | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 38032045 | 38039310 | + | CrPI670011_05g027140.1 | Cre05g2714 | 499227 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2714 | 360 | ProSiteProfiles | ELK domain profile. | 220 | 240 | IPR005539 | GO:0003677(InterPro) | |
Cre05g2714 | 360 | Pfam | KNOX1 domain | 82 | 123 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre05g2714 | 360 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 133 | 313 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre05g2714 | 360 | Gene3D | - | 239 | 311 | - | - | |
Cre05g2714 | 360 | Pfam | KNOX2 domain | 134 | 180 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre05g2714 | 360 | SUPERFAMILY | Homeodomain-like | 241 | 313 | IPR009057 | - | |
Cre05g2714 | 360 | Pfam | Homeobox KN domain | 260 | 299 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre05g2714 | 360 | SMART | HOX_1 | 242 | 307 | IPR001356 | GO:0003677(InterPro) | |
Cre05g2714 | 360 | SMART | KNOX2_2 | 130 | 181 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre05g2714 | 360 | CDD | homeodomain | 252 | 304 | IPR001356 | GO:0003677(InterPro) | |
Cre05g2714 | 360 | SMART | KNOX1_2 | 80 | 124 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre05g2714 | 360 | Pfam | ELK domain | 220 | 241 | IPR005539 | GO:0003677(InterPro) | |
Cre05g2714 | 360 | ProSitePatterns | 'Homeobox' domain signature. | 278 | 301 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre05g2714 | 360 | ProSiteProfiles | 'Homeobox' domain profile. | 240 | 303 | IPR001356 | GO:0003677(InterPro) | |
Cre05g2714 | 360 | SMART | ELK_2 | 220 | 241 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1932 | Cre-Chr5:31489712 | Cre05g2714 | Cre-Chr5:38032045 | 2.00E-72 | dispersed | |
Cre05g2714 | Cre-Chr5:38032045 | Cre08g1625 | Cre-Chr8:28747085 | 2.70E-74 | dispersed | |
Cre02g1810 | Cre-Chr2:31433610 | Cre05g2714 | Cre-Chr5:38032045 | 1.90E-71 | transposed | |
Cre05g2714 | Cre-Chr5:38032045 | Cre06g2572 | Cre-Chr6:33393137 | 1.40E-54 | wgd | |
Cre05g2714 | Cre-Chr5:38032045 | Cre08g1720 | Cre-Chr8:29486087 | 3.60E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53804 | PF03791 | KNOX2 | 6.10E-24 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2714 | - | - | - | 0.0 |