Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2714 ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTTCCGCCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCGGAAGCGGAGGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGATGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAGTTTGAAGGAATGGATGGGCTTTCTTCTGATACTCGGGTCATAAAAATGTCGTCTTCCTTATTTTTCGATGGTGTACTTGACAGAGATGCAATAGAGGCTGTTGGCAAGTCGGGGCTTGGGGTAGCTTTAGCCGATACCTGTATTCGGGTTTTAAAATAG 1083 46.08 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQFEGMDGLSSDTRVIKMSSSLFFDGVLDRDAIEAVGKSGLGVALADTCIRVLK 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38032045 38039310 + CrPI670011_05g027140.1 Cre05g2714 499227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2714 360 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Cre05g2714 360 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g2714 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 313 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre05g2714 360 Gene3D - 239 311 - -
Cre05g2714 360 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g2714 360 SUPERFAMILY Homeodomain-like 241 313 IPR009057 -
Cre05g2714 360 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre05g2714 360 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Cre05g2714 360 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g2714 360 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Cre05g2714 360 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g2714 360 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Cre05g2714 360 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre05g2714 360 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Cre05g2714 360 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1932 Cre-Chr5:31489712 Cre05g2714 Cre-Chr5:38032045 2.00E-72 dispersed
Cre05g2714 Cre-Chr5:38032045 Cre08g1625 Cre-Chr8:28747085 2.70E-74 dispersed
Cre02g1810 Cre-Chr2:31433610 Cre05g2714 Cre-Chr5:38032045 1.90E-71 transposed
Cre05g2714 Cre-Chr5:38032045 Cre06g2572 Cre-Chr6:33393137 1.40E-54 wgd
Cre05g2714 Cre-Chr5:38032045 Cre08g1720 Cre-Chr8:29486087 3.60E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53804 PF03791 KNOX2 6.10E-24 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2714 - - - 0.0