Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2717 ATGGAGGTCGACGGCGGAGCTACGGCGGCGGCTCAGCCGAGGAAATTCTCTCTCCCGGTGGACTCCGAACACAAATCCACCAAATTCAACATATTCTCCGTCGCAGCGCCGCACATGCGAACGTTTCATCTCTCGTGGATTTCCTTCTGCGCTTGTTTCATTTCCAGTTTCGCGGCGGCTCCTCTGCTTCCGGTGATCCGCGACAACCTCGATTTAACCGACACCGACATTGGAAACGCCGGAATCGCCTCCGTCTCCGGCGCCGTCTTCGCCCGAATCATGATGGGTTCCGCCTGCGACTTGGTCGGACCACGTCTCGCCTCCGCTTCCCTCATTCTCATAACCTCACCGGCGGTTTATTTAACCTCCATAGCTTCATCCCCTGTTTCGTTTCTCCTTGTCCGATTCTTCACCGGCTTCTCCCTCGCTACATTCGTCTCAACCCAATTCTGGATGAGTTCCATGTTCTCCTCCAACGTCGTCGGCACCGCCAACGGTGTCGCTGGCGGCTGGGGGAACCTAGGCGGCGGCGCAACACAGTTAATCATGCCGTATGTTTTCGCCATCATCGAACACATCGGCGCAACGAAATTCACCGCGTGGAGAATCGCTTTCTTCATCCCAGCGTTATTCCAAACGCTTTCCGCCTTCGCCGTTCTCCTCCTGGGCGAGGACACTCCTGACGGGAATTTCCGGCGGCTGCAGAAAACAGGGGAGAAGGCGAAAGACGAATTATCGAAAGTTGTGTTGAATGGGGTGAAGAATTACAGGGGATGGATTCTGGCATTGACTTATGGGTATAGTTTCGGAGTGGAATTGACGATTGATAATGTAATAGCGAATTACTTTTACGATAGGTTTAATTTGAATCTGCACACGGCGGGGATAGTGGCGGCGAGTTTTGGGCTGGCGAATCTGTTTTCGAGGCCTTACGGCGGAGTATTGTCGGATGTGGTGGGGAAAAGATTTGGAATGAGAGGGAGGCTGTGGGCTTTGTGGTTGGTGCAAACAATTGGGGGAATTTTGTGTGTGATTCTTGGGTTGGTTAATTCTTTGAGTGCTTCGATTGCCATTATGATCGTTTTTTCAGTGTTTGTTCAAGCTGCTTGTGGACTTACTTTTGGTGTTGTTCCTTTCGTCTCTCGAAGGTCATTAGGAGTAATATCGGGGATGACAGGTGGGGGCGGGAATGTGGGGTCGGTGCTGACTCAGCTGATATTCTTCAGAGGCAACAGATACACAAAAGAGAGAGGAATAAGTCTAATGGGAGTGATGATAATAGCTTGCACTCTCCCAATTGCATTGATTTATTTTCCTCAATGGGGCAGTATGTTCTTTGGGCCTTCCTCCAAAATTGCTTCTGAGGAAGACTATTACTTGTCGGAATGGACTTCTGAGGAGAAGTCCAAAGGCTTCCATATGGCTAGCCTTAAGTTTGCTGAGAATAGTCGAACTGAAAGAGGCAAAAGCTTTAAGGGAACTGCTGATGCTGATCTTGCCTCACCTAATGTTTAA 1515 50.23 MEVDGGATAAAQPRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLDLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSSNVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLSAFAVLLLGEDTPDGNFRRLQKTGEKAKDELSKVVLNGVKNYRGWILALTYGYSFGVELTIDNVIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGVLSDVVGKRFGMRGRLWALWLVQTIGGILCVILGLVNSLSASIAIMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGNRYTKERGISLMGVMIIACTLPIALIYFPQWGSMFFGPSSKIASEEDYYLSEWTSEEKSKGFHMASLKFAENSRTERGKSFKGTADADLASPNV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38057466 38059949 - CrPI670011_05g027170.1 Cre05g2717 499230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2717 504 SUPERFAMILY MFS general substrate transporter 36 438 IPR036259 -
Cre05g2717 504 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 11 489 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Cre05g2717 504 Gene3D MFS general substrate transporter like domains 35 231 IPR036259 -
Cre05g2717 504 MobiDBLite consensus disorder prediction 484 504 - -
Cre05g2717 504 Pfam Major Facilitator Superfamily 46 402 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cre05g2717 504 CDD MFS_NRT2_like 42 435 IPR044772 GO:0015112(InterPro)
Cre05g2717 504 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 442 IPR020846 GO:0022857(InterPro)
Cre05g2717 504 FunFam High affinity nitrate transporter 2.5 34 230 - -
Cre05g2717 504 Gene3D MFS general substrate transporter like domains 240 443 IPR036259 -
Cre05g2717 504 FunFam Nitrate transporter 2.1 242 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0578 Cre-Chr3:4501832 Cre05g2717 Cre-Chr5:38057466 5.90E-174 dispersed
Cre03g0579 Cre-Chr3:4515465 Cre05g2717 Cre-Chr5:38057466 5.90E-174 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2717 K02575 - csv:101212365 860.907