Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2786 ATGGGGTTTCCTCTTTTTTGGGTTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCTATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTTCACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGGAATTATGAACGCCGGTGGGTCATCACCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGGGACTTTCCAATCGATGATAAGAAGTACTGCTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTCCGAGCAACTTTTCAATATGGGAGTTTGAAGGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCAACTGTAACCATTTTTGATGCTTCAAGAGTTTATGTGAAGGAGATGATCGTCAGAGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAAGATAATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCTTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATCAGCACTTTGAACAATATTAATGTAATGACAAGAGAATATCCACCTGTTAAAGTGATGCAGACTGCAGTTCTTGGCTCAAAAGGAGTGCTGAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCAAGAGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAACGAGACACGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAATGCAGTGGTGAATATTGCAGAGAATGCTAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTCGTGCTTTCATTCTCATTCGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCTGTTGTGAATGTCTTCCGTAACGTGTCAGCAGAGAATGTTTGGTCAAATGAAGGTGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGGCACGCAGCCACCGAGAATAACTAAGATAGAGCTTTCCAGAAAGAATGTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTAATGGAATTGTGGTTGGATGGAAATTCCCTTGCTGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTGCCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAATTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACGTGGGGCTGCACAAAAGTGAACGATACAAGATGCATTCTAAGCTTATAGTAGGAGTTTCATTGGGAGTGCTTGTGCTTCTGATTATTCTACTTTTAGGAAGTTTGCTGTTACTCCGCAAGCTTCGAAGAAGAACAGCACCTTACCAGAAAAAAGGCGGTTCTCTGCAAATCAGCACCAAGCGCTCTTCTGGCTACTCAATTGGCAAGGGGGATGAAGGTATGGCCTACTATTTATCTCTCTCCGAGCTGGAAGAAGCGACGAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAGATGATTGACGGCAAAGAAGTGGCAGTTAAGATCATGGCCGAGTCATCTACACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGCGAAGAAGAACATCAACGGATCCTCGTTTACGAATATATGCATAATGGAACGTTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGATTGGCTGGCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAGGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTGTCAACAACTTACCGAAAAGAGCGATGTCTATAGTTTTGGGGTCGTGCTGCTCGAACTGATCTCTGGGAAGAAACCAGTCTCACCAGAAGACTATGGCAATGAATTGAACATTGTTCACTGGGCAAGGTCCCTGGTCCATAAAGGGGATGTGACGAGCATCGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCTGAAGTTGCCATACAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATCGAACAAGGTACTGAAGGAAACCAAAAGCTATCTTCAGGCAGTTTAAAAGCACAATCATCTCGAAAAACTTTGCTGACCACCTTTCTTGAAATCGAGAGCCCCGACGGTTCCCTCCTTCCCTCTGCAAGATAA 2769 42.98 MGFPLFWVLILLLVVSSVYCQVKEFISIDCGGTKNFTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIVRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGSKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDESVVNVFRNVSAENVWSNEGDPCVPTSWEWVTCSGTQPPRITKIELSRKNVKGEIPPEINTMDGLMELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNVGLHKSERYKMHSKLIVGVSLGVLVLLIILLLGSLLLLRKLRRRTAPYQKKGGSLQISTKRSSGYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEQGTEGNQKLSSGSLKAQSSRKTLLTTFLEIESPDGSLLPSAR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38597823 38602509 - CrPI670011_05g027860.1 Cre05g2786 499299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2786 922 Pfam Malectin-like domain 28 360 IPR024788 -
Cre05g2786 922 SMART serkin_6 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2786 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2786 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 679 886 - -
Cre05g2786 922 PANTHER OS07G0107800 PROTEIN-RELATED 455 880 - -
Cre05g2786 922 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524(InterPro)
Cre05g2786 922 Gene3D Ribonuclease Inhibitor 373 511 IPR032675 -
Cre05g2786 922 Pfam Leucine Rich repeats (2 copies) 460 496 IPR025875 -
Cre05g2786 922 ProSiteProfiles Protein kinase domain profile. 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2786 922 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 505 - -
Cre05g2786 922 Gene3D Phosphorylase Kinase; domain 1 582 678 - -
Cre05g2786 922 FunFam receptor-like serine/threonine-protein kinase NCRK 582 678 - -
Cre05g2786 922 SUPERFAMILY L domain-like 390 503 - -
Cre05g2786 922 Gene3D Transferase(Phosphotransferase) domain 1 679 896 - -
Cre05g2786 922 SUPERFAMILY Protein kinase-like (PK-like) 587 870 IPR011009 -
Cre05g2786 922 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1653 Cre-Chr5:27368432 Cre05g2786 Cre-Chr5:38597823 1.10E-66 dispersed
Cre05g2786 Cre-Chr5:38597823 Cre07g1707 Cre-Chr7:32520858 9.70E-116 dispersed
Cre06g1350 Cre-Chr6:7592486 Cre05g2786 Cre-Chr5:38597823 1.80E-42 dispersed
Cre11g0985 Cre-Chr11:7135542 Cre05g2786 Cre-Chr5:38597823 2.40E-58 dispersed
Cre05g2786 Cre-Chr5:38597823 Cre10g2173 Cre-Chr10:36272172 1.10E-239 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64182 PF12819 Malectin_like 3.70E-86 CL0202 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2786 - - - 0.0