Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g2797 | ATGGATTCAAATTCAAAGAAATCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCGAACTCGTCGAAGACGGCCAACAAAATCTCCGGCACGGCGGCAGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACGTTATCGTCGGCCGGTGGGGAAAGCTGCGGCGGCGCAGTACCGAAAGGCTATTTGGCGGTGAGCGTGGGGGAGGAGCAAAAGCGATTTGTGATACCGACGCAGTATTTAGGGCATCCGGCTTTTGAGATTCTGTTAAGAGAAGCGGAGGAGGAGTTCGGATTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGACTTGTTGTTAGGGGGAGAAGAGGTTTTGAGTTTTTGTTCATTGGAAACGCTGCAGTTAACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG | 510 | 50.39 | MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKISGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKKGDLLLGGEEVLSFCSLETLQLTPSHRPQSPMCR | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 38697282 | 38697791 | + | CrPI670011_05g027970.1 | Cre05g2797 | 499310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g2797 | 169 | Pfam | Auxin responsive protein | 16 | 130 | IPR003676 | GO:0009733(InterPro) | |
| Cre05g2797 | 169 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 130 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g0221 | Cre-Chr1:1580352 | Cre05g2797 | Cre-Chr5:38697282 | 8.70E-15 | dispersed | |
| Cre02g2170 | Cre-Chr2:35311020 | Cre05g2797 | Cre-Chr5:38697282 | 9.50E-15 | dispersed | |
| Cre04g1107 | Cre-Chr4:29729947 | Cre05g2797 | Cre-Chr5:38697282 | 1.30E-13 | dispersed | |
| Cre05g2797 | Cre-Chr5:38697282 | Cre11g0504 | Cre-Chr11:1898853 | 2.90E-18 | dispersed | |
| Cre05g2797 | Cre-Chr5:38697282 | Cre05g2018 | Cre-Chr5:32187649 | 6.50E-18 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g2797 | K14488 | - | csv:101216710 | 273.092 |