Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2806 ATGGCGCCGGGATTCGGGTTTTTATGTCGGTGGGGTAAAGAGAAAGACTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAATTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTGAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTAACTGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGGGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAGCTTCCATTGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCACCCCTCATCCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTCTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAGCCCAAGATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGTTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGTGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGGCCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGCTAATTAAGGCAGAGGTCGCTAAATGGAGCCAAAAGGGGGTAAACATAGTGTATCGCCATCGATCAGTAAGGACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCATTCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTTGTGAACCGGGATGAAAATTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAGGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTTGTTCCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTAAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACCAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGACAATGAATCAAGTGTCGATCTGTAGAGGTGCGTCAGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTCGTCTCTGCGCCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCACTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTTCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.53 MAPGFGFLCRWGKEKDSQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVASIAILAFEMLAYFKGWHYFQNSNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCLGCLWIKYKRIEPKIEGDPFKLDDEEGVGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRGHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIVYRHRSVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTIPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVSICRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38791771 38794579 + CrPI670011_05g028060.1 Cre05g2806 499319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2806 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 151 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cre05g2806 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 449 IPR029044 -
Cre05g2806 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Cre05g2806 695 Pfam Glycosyl transferase family group 2 324 535 IPR001173 -
Cre05g2806 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2806 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0579 Cre-Chr1:5071716 Cre05g2806 Cre-Chr5:38791771 4.60E-269 dispersed
Cre05g2806 Cre-Chr5:38791771 Cre05g2817 Cre-Chr5:38873741 3.40E-262 dispersed
Cre05g2806 Cre-Chr5:38791771 Cre10g2054 Cre-Chr10:35247490 5.80E-113 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0684 . 358 520 REM Transcription Factor Family AT1G49480 70.6 9.5e-57 217.2
Cre05g2806 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1087.8
Cre01g0579 . 6 666 REM Transcription Factor Family AT2G24630 69.5 1.8e-268 922.2
Cre05g2817 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.6e-262 901.7
Cre08g1618 . 5 698 REM Transcription Factor Family AT2G24630 66.8 2.2e-261 898.7
Cre09g0807 . 5 692 REM Transcription Factor Family AT2G24630 62.3 7.5e-246 847.0
Cre08g0758 . 26 404 REM Transcription Factor Family AT2G24630 52.0 7.8e-110 395.2
Cre05g2806 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1087.8
Cre01g0579 . 6 666 REM Transcription Factor Family AT2G24630 69.5 1.8e-268 922.2
Cre05g2817 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.6e-262 901.7
Cre08g1618 . 5 698 REM Transcription Factor Family AT2G24630 66.8 2.2e-261 898.7
Cre09g0807 . 5 692 REM Transcription Factor Family AT2G24630 62.3 7.5e-246 847.0
Cre08g0758 . 26 404 REM Transcription Factor Family AT2G24630 52.0 7.8e-110 395.2
Cre05g2806 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1087.8
Cre01g0579 . 6 666 REM Transcription Factor Family AT2G24630 69.5 1.8e-268 922.2
Cre05g2817 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.6e-262 901.7
Cre08g1618 . 5 698 REM Transcription Factor Family AT2G24630 66.8 2.2e-261 898.7
Cre09g0807 . 5 692 REM Transcription Factor Family AT2G24630 62.3 7.5e-246 847.0
Cre08g0758 . 26 404 REM Transcription Factor Family AT2G24630 52.0 7.8e-110 395.2
Cre01g0684 . 358 520 REM Transcription Factor Family AT1G49480 70.6 9.5e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38