Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2807 ATGGAACTGAAGAAAGGCAAATTCGTCAGGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAGCATTGAGTTCTCATTACCAGTTTTCAAAATGGGGAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCGGATTCTTCAGGGAGGTCCAAGGGCTTTTTGGAGAGTAATGGGTTACAAGAAGAGAAGAACAAGAGGATTCTTAATCCAGAAAGTGAAAGGATTCTGAGATGGAATAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAAGAGGTCGTCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGGTGAACTCGTTACTGATCCAAAGAAGATTGCCAAACGCTATTTGAAGTCAGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCGCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATACAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTGCTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTCCGCCTGCAGGAGCGAATTCAGTCCTATGAAATGCCGTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGAAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTTGTTTTCAATTACGGGATATTTGCGAATGCGATCGCCAAAGATGTCGTTTCCTCCAGGTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGTCGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACGGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTCGACGAAGAGTCAATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGACTTGCTTCCTCTCTATGTACACAACGTACCTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAAAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTTCAGCACACATTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCGCTCAGCTTGCAGGAGTCTTTCTCGATGACTCCTGAGAAGCCAGTGGCGGATGAAGCCGAACAAGAAGAGGAAGAGCATAATACTCCACGCTCCAATTACTCTCAAGCAAAACAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCTCAAAAGCTTAAGGATGTCAACTTATCCAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCTGAAGAACCAGACGATTAA 2184 42.99 MELKKGKFVRFYSNEKKNLELPWEKNDGKKRSIEFSLPVFKMGKKLENESKIMNSDSSGRSKGFLESNGLQEEKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHKRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKSACRSEFSPMKCRLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFANAIAKDVVSSRFLQKYFYCLWWGLQNLSSYGQGLSTSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVKAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVADEAEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38797007 38800812 - CrPI670011_05g028070.1 Cre05g2807 499320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2807 727 FunFam Cyclic nucleotide-gated ion channel 1 485 603 - -
Cre05g2807 727 CDD CAP_ED 487 618 IPR000595 -
Cre05g2807 727 Pfam Ion transport protein 89 414 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2807 727 ProSiteProfiles cAMP/cGMP binding motif profile. 487 570 IPR000595 -
Cre05g2807 727 Gene3D Jelly Rolls 485 605 IPR014710 -
Cre05g2807 727 Gene3D Helix hairpin bin 415 478 - -
Cre05g2807 727 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 704 - -
Cre05g2807 727 MobiDBLite consensus disorder prediction 654 681 - -
Cre05g2807 727 FunFam Cyclic nucleotide-gated ion channel 1 414 478 - -
Cre05g2807 727 MobiDBLite consensus disorder prediction 707 727 - -
Cre05g2807 727 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Cre05g2807 727 SUPERFAMILY cAMP-binding domain-like 417 609 IPR018490 -
Cre05g2807 727 Gene3D - 91 413 - -
Cre05g2807 727 SMART cnmp_10 487 618 IPR000595 -
Cre05g2807 727 Pfam Cyclic nucleotide-binding domain 511 599 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2807 Cre-Chr5:38797007 Cre06g2161 Cre-Chr6:29450966 4.90E-280 dispersed
Cre05g2807 Cre-Chr5:38797007 Cre10g1579 Cre-Chr10:29826647 5.10E-245 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2807 K05391 - csv:101211072 1287.71