Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2813 ATGGCGGTCGATCTGATGAGTTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCTTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTCCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAAACAGGCGATGAATCTCACTCCTACTCCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTCGCTCAGCCACAGGCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAACGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1056 50.95 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSFPQKQAMNLTPTPFTSPAAVPAPPFTAPASVAQPQAKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38847898 38849539 + CrPI670011_05g028130.1 Cre05g2813 499326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2813 351 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2813 351 Gene3D WRKY domain 246 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2813 351 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2813 351 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2813 351 MobiDBLite consensus disorder prediction 72 93 - -
Cre05g2813 351 FunFam WRKY transcription factor 65 257 334 - -
Cre05g2813 351 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2813 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 334 IPR044810 GO:0003700(InterPro)
Cre05g2813 351 MobiDBLite consensus disorder prediction 74 93 - -
Cre05g2813 351 Pfam Plant zinc cluster domain 220 271 IPR018872 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2813 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1325 Cre-Chr4:32071065 Cre05g2813 Cre-Chr5:38847898 1.40E-52 dispersed
Cre05g2813 Cre-Chr5:38847898 Cre06g2248 Cre-Chr6:30409200 5.20E-70 dispersed
Cre05g2813 Cre-Chr5:38847898 Cre05g2205 Cre-Chr5:33756245 1.10E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0607 . 156 404 WRKY Transcription Factor Family AT2G04880 57.9 3.1e-78 289.7
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT5G56270 53.6 8.7e-69 258.8
Cre05g2563 . 18 491 WRKY Transcription Factor Family AT2G03340 52.3 4.7e-120 428.7
Cre11g0945 . 12 503 WRKY Transcription Factor Family AT2G03340 52.3 4.9e-117 418.7
Cre03g0335 . 228 489 WRKY Transcription Factor Family AT2G03340 52.9 8.7e-66 248.4
Cre05g2563 . 108 491 WRKY Transcription Factor Family AT1G13960 56.5 1.1e-99 360.5
Cre11g0945 . 139 503 WRKY Transcription Factor Family AT1G13960 51.3 2.1e-82 303.1
Cre03g0335 . 227 517 WRKY Transcription Factor Family AT1G13960 50.8 6.0e-69 258.5
Cre10g2352 . 167 394 WRKY Transcription Factor Family AT1G13960 53.7 2.3e-65 246.5
Cre10g0687 . 206 456 WRKY Transcription Factor Family AT1G13960 51.7 1.3e-63 240.7
Cre10g0687 . 25 573 WRKY Transcription Factor Family AT4G26640 52.0 1.4e-135 480.3
Cre05g2563 . 198 447 WRKY Transcription Factor Family AT4G26640 52.5 2.6e-65 246.9
Cre11g0945 . 230 469 WRKY Transcription Factor Family AT4G26640 51.0 4.4e-65 246.1
Cre03g0335 . 225 475 WRKY Transcription Factor Family AT5G07100 57.7 1.4e-68 256.5
Cre10g2352 . 152 381 WRKY Transcription Factor Family AT5G07100 57.3 3.0e-68 255.4
Cre02g2227 . 234 467 WRKY Transcription Factor Family AT5G07100 51.1 2.2e-58 222.6
Cre06g2110 . 192 513 WRKY Transcription Factor Family AT4G30935 60.3 1.9e-99 360.1
Cre03g0335 . 234 583 WRKY Transcription Factor Family AT2G38470 58.1 4.8e-96 349.0
Cre10g0629 . 353 637 WRKY Transcription Factor Family AT2G38470 52.1 4.2e-68 256.1
Cre05g2563 . 198 446 WRKY Transcription Factor Family AT2G38470 55.4 2.6e-65 246.9
Cre10g0687 . 214 456 WRKY Transcription Factor Family AT2G38470 51.7 4.5e-62 236.1
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT4G26440 52.5 8.2e-65 245.4
Cre05g1530 . 73 164 WRKY Transcription Factor Family AT3G01970 77.2 1.3e-38 156.4
Cre07g1901 . 101 195 WRKY Transcription Factor Family AT3G01970 72.6 6.5e-38 154.1
Cre06g2502 . 202 362 WRKY Transcription Factor Family AT1G62300 55.9 3.6e-41 166.8
Cre05g1165 . 216 328 WRKY Transcription Factor Family AT1G62300 69.9 5.2e-40 162.9
Cre05g1165 . 65 327 WRKY Transcription Factor Family AT1G68150 52.9 1.7e-58 223.8
Cre02g0538 . 294 391 WRKY Transcription Factor Family AT1G68150 75.5 4.3e-38 156.0
Cre04g1796 . 332 429 WRKY Transcription Factor Family AT1G68150 74.5 6.2e-37 152.1
Cre04g1796 . 42 576 WRKY Transcription Factor Family AT4G22070 50.8 3.9e-109 392.5
Cre05g1165 . 208 328 WRKY Transcription Factor Family AT4G22070 66.1 5.6e-39 159.5
Cre06g2502 . 193 362 WRKY Transcription Factor Family AT4G22070 53.2 1.4e-37 154.8
Cre04g1796 . 134 577 WRKY Transcription Factor Family AT4G04450 50.2 1.2e-95 347.4
Cre02g0538 . 108 516 WRKY Transcription Factor Family AT4G04450 51.5 3.6e-89 325.9
Cre06g2502 . 202 371 WRKY Transcription Factor Family AT4G04450 54.7 9.7e-42 168.3
Cre02g0538 . 293 381 WRKY Transcription Factor Family AT1G18860 76.4 2.3e-37 154.1
Cre05g0068 . 25 202 WRKY Transcription Factor Family AT2G44745 54.5 3.6e-45 178.7
Cre02g0437 . 114 233 WRKY Transcription Factor Family AT2G44745 62.4 7.3e-38 154.5
Cre04g1218 . 141 225 WRKY Transcription Factor Family AT2G44745 78.8 1.1e-36 150.6
Cre02g0437 . 140 247 WRKY Transcription Factor Family AT4G39410 78.8 1.3e-45 180.6
Cre04g1218 . 134 244 WRKY Transcription Factor Family AT4G39410 73.0 4.0e-42 169.1
Cre07g1140 . 78 174 WRKY Transcription Factor Family AT5G41570 80.4 1.3e-43 173.3
Cre04g2045 . 85 258 WRKY Transcription Factor Family AT4G18170 57.0 4.0e-45 179.1
Cre01g0235 . 118 220 WRKY Transcription Factor Family AT4G18170 74.8 1.1e-39 161.0
Cre05g0812 . 167 341 WRKY Transcription Factor Family AT5G49520 50.8 2.9e-40 163.3
Cre01g0235 . 108 266 WRKY Transcription Factor Family AT5G49520 54.3 1.6e-38 157.5
Cre07g1140 . 67 176 WRKY Transcription Factor Family AT1G64000 78.2 2.5e-45 179.1
Cre08g0967 . 109 288 WRKY Transcription Factor Family AT1G69310 59.6 3.4e-51 199.1
Cre06g1206 . 135 231 WRKY Transcription Factor Family AT1G69310 76.3 3.9e-39 159.1
Cre04g2045 . 77 250 WRKY Transcription Factor Family AT1G29860 57.6 2.4e-49 193.0
Cre01g0235 . 102 217 WRKY Transcription Factor Family AT1G29860 68.1 1.7e-39 160.2
Cre07g1901 . 97 195 WRKY Transcription Factor Family AT5G13080 82.8 3.5e-44 174.9
Cre05g1530 . 70 166 WRKY Transcription Factor Family AT5G13080 81.4 2.1e-41 165.6
Cre05g2813 . 1 294 WRKY Transcription Factor Family AT4G31550 59.7 1.7e-81 299.7
Cre06g2248 . 1 224 WRKY Transcription Factor Family AT4G31550 50.4 1.8e-51 199.9
Cre05g2813 . 1 350 WRKY Transcription Factor Family AT2G24570 61.1 2.3e-104 375.9
Cre06g2248 . 1 272 WRKY Transcription Factor Family AT2G24570 50.2 2.6e-68 256.1
Cre09g0718 . 211 356 WRKY Transcription Factor Family AT2G24570 54.7 9.4e-42 167.9
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT2G30590 53.2 3.3e-86 315.8
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT2G30590 53.8 9.6e-86 314.3
Cre05g2205 . 213 372 WRKY Transcription Factor Family AT2G30590 59.3 2.0e-46 183.7
Cre02g1125 . 156 281 WRKY Transcription Factor Family AT2G30590 68.2 5.3e-44 175.6
Cre04g1325 . 120 283 WRKY Transcription Factor Family AT2G30590 57.2 7.0e-44 175.3
Cre05g2813 . 170 331 WRKY Transcription Factor Family AT2G30590 56.1 1.1e-41 167.9
Cre06g2248 . 120 262 WRKY Transcription Factor Family AT2G30590 56.5 5.5e-41 165.6
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT5G28650 50.4 7.6e-79 291.2
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT5G28650 51.0 1.3e-78 290.4
Cre04g1325 . 133 284 WRKY Transcription Factor Family AT5G28650 61.8 6.7e-43 171.8
Cre02g1125 . 177 283 WRKY Transcription Factor Family AT5G28650 72.0 1.1e-40 164.5
Cre04g2145 . 196 317 WRKY Transcription Factor Family AT1G30650 82.0 3.4e-55 213.0
Cre05g0206 . 131 227 WRKY Transcription Factor Family AT1G30650 65.5 9.3e-37 151.8
Cre03g1149 . 149 280 WRKY Transcription Factor Family AT4G01250 59.3 5.9e-38 155.2
Cre05g0206 . 135 235 WRKY Transcription Factor Family AT5G52830 73.5 3.3e-40 162.9
Cre03g1149 . 3 277 WRKY Transcription Factor Family AT2G34830 50.3 9.4e-61 231.5
Cre04g2145 . 90 317 WRKY Transcription Factor Family AT2G34830 55.3 4.1e-56 216.1
Cre05g0206 . 132 227 WRKY Transcription Factor Family AT2G34830 67.9 1.5e-37 154.5
Cre03g0976 . 47 247 WRKY Transcription Factor Family AT1G29280 53.6 2.1e-52 203.0
Cre07g0618 . 42 300 WRKY Transcription Factor Family AT3G58710 55.2 1.1e-46 184.1
Cre02g0607 . 156 404 WRKY Transcription Factor Family AT2G04880 57.9 3.1e-78 289.7
Cre05g2813 . 1 294 WRKY Transcription Factor Family AT4G31550 59.7 1.7e-81 299.7
Cre06g2248 . 1 224 WRKY Transcription Factor Family AT4G31550 50.4 1.8e-51 199.9
Cre05g0068 . 25 202 WRKY Transcription Factor Family AT2G44745 54.5 3.6e-45 178.7
Cre02g0437 . 114 233 WRKY Transcription Factor Family AT2G44745 62.4 7.3e-38 154.5
Cre04g1218 . 141 225 WRKY Transcription Factor Family AT2G44745 78.8 1.1e-36 150.6
Cre02g0437 . 140 247 WRKY Transcription Factor Family AT4G39410 78.8 1.3e-45 180.6
Cre04g1218 . 134 244 WRKY Transcription Factor Family AT4G39410 73.0 4.0e-42 169.1
Cre04g2145 . 196 317 WRKY Transcription Factor Family AT1G30650 82.0 3.4e-55 213.0
Cre05g0206 . 131 227 WRKY Transcription Factor Family AT1G30650 65.5 9.3e-37 151.8
Cre05g2813 . 1 350 WRKY Transcription Factor Family AT2G24570 61.1 2.3e-104 375.9
Cre06g2248 . 1 272 WRKY Transcription Factor Family AT2G24570 50.2 2.6e-68 256.1
Cre09g0718 . 211 356 WRKY Transcription Factor Family AT2G24570 54.7 9.4e-42 167.9
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT5G56270 53.6 8.7e-69 258.8
Cre10g0687 . 25 573 WRKY Transcription Factor Family AT4G26640 52.0 1.4e-135 480.3
Cre05g2563 . 198 447 WRKY Transcription Factor Family AT4G26640 52.5 2.6e-65 246.9
Cre11g0945 . 230 469 WRKY Transcription Factor Family AT4G26640 51.0 4.4e-65 246.1
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT2G30590 53.2 3.3e-86 315.8
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT2G30590 53.8 9.6e-86 314.3
Cre05g2205 . 213 372 WRKY Transcription Factor Family AT2G30590 59.3 2.0e-46 183.7
Cre02g1125 . 156 281 WRKY Transcription Factor Family AT2G30590 68.2 5.3e-44 175.6
Cre04g1325 . 120 283 WRKY Transcription Factor Family AT2G30590 57.2 7.0e-44 175.3
Cre05g2813 . 170 331 WRKY Transcription Factor Family AT2G30590 56.1 1.1e-41 167.9
Cre06g2248 . 120 262 WRKY Transcription Factor Family AT2G30590 56.5 5.5e-41 165.6
Cre03g1149 . 149 280 WRKY Transcription Factor Family AT4G01250 59.3 5.9e-38 155.2
Cre07g1140 . 78 174 WRKY Transcription Factor Family AT5G41570 80.4 1.3e-43 173.3
Cre03g0335 . 225 475 WRKY Transcription Factor Family AT5G07100 57.7 1.4e-68 256.5
Cre10g2352 . 152 381 WRKY Transcription Factor Family AT5G07100 57.3 3.0e-68 255.4
Cre02g2227 . 234 467 WRKY Transcription Factor Family AT5G07100 51.1 2.2e-58 222.6
Cre05g0206 . 135 235 WRKY Transcription Factor Family AT5G52830 73.5 3.3e-40 162.9
Cre04g2045 . 85 258 WRKY Transcription Factor Family AT4G18170 57.0 4.0e-45 179.1
Cre01g0235 . 118 220 WRKY Transcription Factor Family AT4G18170 74.8 1.1e-39 161.0
Cre05g2563 . 18 491 WRKY Transcription Factor Family AT2G03340 52.3 4.7e-120 428.7
Cre11g0945 . 12 503 WRKY Transcription Factor Family AT2G03340 52.3 4.9e-117 418.7
Cre03g0335 . 228 489 WRKY Transcription Factor Family AT2G03340 52.9 8.7e-66 248.4
Cre04g1796 . 42 576 WRKY Transcription Factor Family AT4G22070 50.8 3.9e-109 392.5
Cre05g1165 . 208 328 WRKY Transcription Factor Family AT4G22070 66.1 5.6e-39 159.5
Cre06g2502 . 193 362 WRKY Transcription Factor Family AT4G22070 53.2 1.4e-37 154.8
Cre06g2110 . 192 513 WRKY Transcription Factor Family AT4G30935 60.3 1.9e-99 360.1
Cre03g0335 . 234 583 WRKY Transcription Factor Family AT2G38470 58.1 4.8e-96 349.0
Cre10g0629 . 353 637 WRKY Transcription Factor Family AT2G38470 52.1 4.2e-68 256.1
Cre05g2563 . 198 446 WRKY Transcription Factor Family AT2G38470 55.4 2.6e-65 246.9
Cre10g0687 . 214 456 WRKY Transcription Factor Family AT2G38470 51.7 4.5e-62 236.1
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT4G26440 52.5 8.2e-65 245.4
Cre03g1149 . 3 277 WRKY Transcription Factor Family AT2G34830 50.3 9.4e-61 231.5
Cre04g2145 . 90 317 WRKY Transcription Factor Family AT2G34830 55.3 4.1e-56 216.1
Cre05g0206 . 132 227 WRKY Transcription Factor Family AT2G34830 67.9 1.5e-37 154.5
Cre05g2563 . 108 491 WRKY Transcription Factor Family AT1G13960 56.5 1.1e-99 360.5
Cre11g0945 . 139 503 WRKY Transcription Factor Family AT1G13960 51.3 2.1e-82 303.1
Cre03g0335 . 227 517 WRKY Transcription Factor Family AT1G13960 50.8 6.0e-69 258.5
Cre10g2352 . 167 394 WRKY Transcription Factor Family AT1G13960 53.7 2.3e-65 246.5
Cre10g0687 . 206 456 WRKY Transcription Factor Family AT1G13960 51.7 1.3e-63 240.7
Cre04g1796 . 134 577 WRKY Transcription Factor Family AT4G04450 50.2 1.2e-95 347.4
Cre02g0538 . 108 516 WRKY Transcription Factor Family AT4G04450 51.5 3.6e-89 325.9
Cre06g2502 . 202 371 WRKY Transcription Factor Family AT4G04450 54.7 9.7e-42 168.3
Cre05g1530 . 73 164 WRKY Transcription Factor Family AT3G01970 77.2 1.3e-38 156.4
Cre07g1901 . 101 195 WRKY Transcription Factor Family AT3G01970 72.6 6.5e-38 154.1
Cre05g0812 . 167 341 WRKY Transcription Factor Family AT5G49520 50.8 2.9e-40 163.3
Cre01g0235 . 108 266 WRKY Transcription Factor Family AT5G49520 54.3 1.6e-38 157.5
Cre07g1140 . 67 176 WRKY Transcription Factor Family AT1G64000 78.2 2.5e-45 179.1
Cre08g0967 . 109 288 WRKY Transcription Factor Family AT1G69310 59.6 3.4e-51 199.1
Cre06g1206 . 135 231 WRKY Transcription Factor Family AT1G69310 76.3 3.9e-39 159.1
Cre06g2502 . 202 362 WRKY Transcription Factor Family AT1G62300 55.9 3.6e-41 166.8
Cre05g1165 . 216 328 WRKY Transcription Factor Family AT1G62300 69.9 5.2e-40 162.9
Cre02g0538 . 293 381 WRKY Transcription Factor Family AT1G18860 76.4 2.3e-37 154.1
Cre03g0976 . 47 247 WRKY Transcription Factor Family AT1G29280 53.6 2.1e-52 203.0
Cre07g0618 . 42 300 WRKY Transcription Factor Family AT3G58710 55.2 1.1e-46 184.1
Cre04g2045 . 77 250 WRKY Transcription Factor Family AT1G29860 57.6 2.4e-49 193.0
Cre01g0235 . 102 217 WRKY Transcription Factor Family AT1G29860 68.1 1.7e-39 160.2
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT5G28650 50.4 7.6e-79 291.2
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT5G28650 51.0 1.3e-78 290.4
Cre04g1325 . 133 284 WRKY Transcription Factor Family AT5G28650 61.8 6.7e-43 171.8
Cre02g1125 . 177 283 WRKY Transcription Factor Family AT5G28650 72.0 1.1e-40 164.5
Cre07g1901 . 97 195 WRKY Transcription Factor Family AT5G13080 82.8 3.5e-44 174.9
Cre05g1530 . 70 166 WRKY Transcription Factor Family AT5G13080 81.4 2.1e-41 165.6
Cre05g1165 . 65 327 WRKY Transcription Factor Family AT1G68150 52.9 1.7e-58 223.8
Cre02g0538 . 294 391 WRKY Transcription Factor Family AT1G68150 75.5 4.3e-38 156.0
Cre04g1796 . 332 429 WRKY Transcription Factor Family AT1G68150 74.5 6.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003596 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53806 PF03106 WRKY 6.70E-26 CL0274 Cre TF