Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2818 ATGGGGTTTGACTGGAATGGCTGGCTGGCGATTGGCTGTGGTTTGAAGATGCAGACAGCAACTATAGCTGGAAATGGTAGAGCAGGACAAGCAACTCTTGAATTTCAAAGGGGGAGAAAAAAGATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCCAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGTATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACCGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATGTGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACGATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA 1308 43.35 MGFDWNGWLAIGCGLKMQTATIAGNGRAGQATLEFQRGRKKMGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNVATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38880627 38884346 - CrPI670011_05g028180.1 Cre05g2818 499331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2818 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 336 IPR036638 GO:0046983(InterPro)
Cre05g2818 435 Gene3D - 268 340 IPR036638 GO:0046983(InterPro)
Cre05g2818 435 MobiDBLite consensus disorder prediction 206 220 - -
Cre05g2818 435 CDD bHLH_AtBPE_like 261 346 - -
Cre05g2818 435 MobiDBLite consensus disorder prediction 194 281 - -
Cre05g2818 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983(InterPro)
Cre05g2818 435 SMART finulus 277 327 IPR011598 GO:0046983(InterPro)
Cre05g2818 435 MobiDBLite consensus disorder prediction 221 251 - -
Cre05g2818 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 397 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre05g2818 435 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983(InterPro)
Cre05g2818 435 FunFam Basic helix-loop-helix transcription factor 268 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2818 Cre-Chr5:38880627 Cre08g1617 Cre-Chr8:28658372 2.60E-47 dispersed
Cre05g2818 Cre-Chr5:38880627 Cre02g0851 Cre-Chr2:5344030 4.00E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53807 PF00010 HLH 4.60E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2818 - - - 0.0