Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2819 ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCACGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTATCATGGAATCAATCAGCACATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAACTGGAGGACTTTCTTGGTGGTGCAACTCGTGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGACAACATTCTTTGGATCTTTTTAAGCAACAAGAGCAACTACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTGTTCCAGTATCCTACTGAGGATCCTAACAAGGAGTCTCATATTGCAAGCTGTTATTCTGAAATTCGACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAGTTCTCAGTCTAGTTGTGTTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGCCAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCATATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACGTCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGTGAGGCGAAACACAGAACAAAAACCAACCAACACCATCAAACATAAAGATCCAAAACAGAACATCGATAAAATCGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGCGGTATTCAACGACAACCTGATATTGGATCCAAGTGCAATGGTTGAATCCACAGACCAAAACAAGTACAAGGCTCACTTCTCCGATGCTTCCTCTGCTGTGAGCAGCAGCAGGAGCTCAAGGGAAACAAGTCCTGATAAGTGA 1518 43.08 MAMEVTSESQQHSHYHYHSQASSAGVVSNTTSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISTSQPQETLPNISPKLEDFLGGATRGKEATTLSLDNIYYNQNNEVDSERQHSLDLFKQQEQLHILFHSQRYYSGLFQYPTEDPNKESHIASCYSEIRQDMEQRINGCCFGGMNCQDLQPLSLSTSPSSQSSCVPSQISQPGPATMETKKRAFANRKQSVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFVRRNTEQKPTNTIKHKDPKQNIDKIDDPSKISNNLDRKAVFNDNLILDPSAMVESTDQNKYKAHFSDASSAVSSSRSSRETSPDK 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38892665 38895179 - CrPI670011_05g028190.1 Cre05g2819 499332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2819 505 MobiDBLite consensus disorder prediction 483 505 - -
Cre05g2819 505 MobiDBLite consensus disorder prediction 192 211 - -
Cre05g2819 505 MobiDBLite consensus disorder prediction 428 449 - -
Cre05g2819 505 Pfam AP2 domain 240 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 Pfam AP2 domain 343 392 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 MobiDBLite consensus disorder prediction 192 210 - -
Cre05g2819 505 FunFam AP2-like ethylene-responsive transcription factor 341 402 - -
Cre05g2819 505 CDD AP2 239 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 Gene3D AP2/ERF domain 239 308 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 Gene3D AP2/ERF domain 342 402 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 PRINTS Ethylene responsive element binding protein signature 382 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 ProSiteProfiles AP2/ERF domain profile. 240 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 MobiDBLite consensus disorder prediction 426 449 - -
Cre05g2819 505 MobiDBLite consensus disorder prediction 1 20 - -
Cre05g2819 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 152 436 - -
Cre05g2819 505 CDD AP2 341 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 FunFam AP2-like ethylene-responsive transcription factor ANT 239 308 - -
Cre05g2819 505 SUPERFAMILY DNA-binding domain 239 307 IPR016177 GO:0003677(InterPro)
Cre05g2819 505 SUPERFAMILY DNA-binding domain 341 401 IPR016177 GO:0003677(InterPro)
Cre05g2819 505 SMART rav1_2 342 406 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 SMART rav1_2 240 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2819 505 MobiDBLite consensus disorder prediction 483 498 - -
Cre05g2819 505 ProSiteProfiles AP2/ERF domain profile. 342 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1401 Cre-Chr4:32806208 Cre05g2819 Cre-Chr5:38892665 6.40E-127 dispersed
Cre05g2819 Cre-Chr5:38892665 Cre07g1765 Cre-Chr7:33149737 2.60E-99 dispersed
Cre05g2819 Cre-Chr5:38892665 Cre08g1616 Cre-Chr8:28644650 2.40E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53808 PF00847 AP2 1.10E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2819 K09285 - csv:101212143 763.451