Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2828 ATGCCGATGTACCAGCCTTCCTGTCGGAGAAGAGAGCCCGATTCGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGTGGCGGTGGCGGTGGAGGCGGTGGGTTAATTTGCGAGGGTGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTCAGAATATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAACGATCCAACATCTTGAAATGGTTCTCTCTTGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGTCAAGTTGTAGCTTCAAATTCGGCAAAGAACACTGTGGAAGGCAATGGTGGTGTTGCTTTGATTTCCTCTTTGTTGGGTCCTTTTACATCGCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAACCTTGTTCAACCTGCCAAGATTTCGTTAATGGTGGACATGTTGAACGAGGGATCCACAGATACCAAAATCAACTGCACAAGATTGATTGAAACGCTGCTCGATGGGGATGATTGTGGAGCGAACACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAAGAAAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAAGTTGCTAAAAGTTCTGTGCTCCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATCCCGCAATTGATCGAAATTCTCCCGAATTTCGACCCCGAGTGTTTGGAATTAGCCCTTCATGTATTGGACTCACTCTCATCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAACTTAGTCAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTGTCAATCCTATGGGCAGTCTGTAAACTCGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTTTGGTGATTCAGAGCGGTTGCAACCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTAAATTACACAGCAACCCTATTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 47.33 MPMYQPSCRRREPDSELGLGGGGQVLDVETAVKDGILGGGGGGGGGLICEGGMTEKLDLKEIVEELQNIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVASNSAKNTVEGNGGVALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLDGDDCGANTVSSLSLLVGLLRLIKEKKHPNGVLAGLKLLKVLCSQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38949712 38951076 - CrPI670011_05g028280.1 Cre05g2828 499341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2828 454 CDD RING-Ubox_PUB 72 122 IPR045210 -
Cre05g2828 454 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2828 454 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2828 454 MobiDBLite consensus disorder prediction 1 22 - -
Cre05g2828 454 Gene3D - 145 442 IPR011989 -
Cre05g2828 454 SUPERFAMILY ARM repeat 240 437 IPR016024 -
Cre05g2828 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Cre05g2828 454 PANTHER WDSAM1 PROTEIN 67 449 IPR045185 GO:0061630(InterPro)
Cre05g2828 454 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2828 454 SUPERFAMILY RING/U-box 67 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2828 Cre-Chr5:38949712 Cre08g1608 Cre-Chr8:28552026 6.10E-164 dispersed
Cre05g2828 Cre-Chr5:38949712 Cre04g1187 Cre-Chr4:30496225 9.90E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2828 - - - 0.0