Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2829 ATGGCCACTCCCCTTTTCCGGTCGTCGGTTTTCTTGGCTGTTTTTGTTTCTCAGGTGGTCTTCTCCGCCTCATCCTGGACAGTCAAATATCTGCCTGGATTCTCAGGTCCTCTTCCGTTTCAACTTGAAACTGGGTATGTGGGAGTGGGGGATTCGGAGGAAGTTCAGTTGTTTTATTACTTTGTCAAATCCCAAGGAAATCCCCAAACCGATCCTCTAATGACTTGGTTGGCCGGCGGCCCTGGTTGCTCTGCTTTCTCTGGTCTCGCCTTTGAAATTGGTCCTATAAATTTCAAGGTAGAGCCATACAATGGAACCGTACCTCAACTAATCTTGAATCCTGATGCATGGACTAAGAAAGCTAGTATTCTATTTATAGATTCGCCTGTTGGCACTGGATTTTCATATAGTCGAACTCTACGAGGCTCTAAGAGAGGAGATTTTTTACAAGTAGAACAAATTCATCAATTTTTAAGAAAGTGGCTCGCAAACCACCCAGAATTTATATCTAATCCATTTTACGTTGGTGGAGACTCTTACTCTGGTATGATTGTTCCACCTATTACTCAAGCAATCTCAGAAGGAAATAAACACGAAGTCCCACTTATAAACCTCCAGGGATACGTCGTGGGAAATCCAGTCAGCGTACGTAAAACAAACGATAATTCTAGGATTCCTTATGCTTATAGATTGACGCTCATCTCTACAGAATTGTATGAGTCATTAACAAATAGTTGCAAGGGAGAATATGAAAATGTTGATCCGAATAACGAGGAGTGCGTCAATCATGTATCAACCTTCAAAAAGTGTGTGAGTAGAATCAATTATTGGTGTATTTCTTGCCCTTATTGTGAGGATGTATCTTTGGCGCCACAAGATAAGATTGGACGGCGAAGATCTCTCTACAACACCTCCCAAGAAGTGCTTCTTGCTATGAGAGTGTTACCTCCTCCTTCTCTTGACTGTCAAGAGTATAAGTACTACCTTAGTTACTATTGGACAAACGATGACCAAGTTCGAAAAGCACTTCACATACGTGAGGGAACTATCGAAGAATGGATAAGATGCCAGAACCGTAAAAGTTACGAATATGATATTATGAGTGTTGTTCCTTATCATGCTAATCTTAGTTTTAAAGGTTATCGATCTTTGGTTTTTAGTGGGGATCATGATCTGATGGTGCCGGTCATAGACACTGAAGCATGGGTCAGGTCCCTAAGTTATCCTATTGTCGATGATTGGAGACCTTGGTTTAACACGGAAGATCAAATACTTGGATACACAAGAACGTATGCAAATAACATGACATTTGCAACCATTAAAGGTGGAGGGCACACACCAGAATTCATGCAAACTCAAAGTCGCATAATGTTTTATAGATGGATACAAGGAGAATCTTTATGA 1404 41.03 MATPLFRSSVFLAVFVSQVVFSASSWTVKYLPGFSGPLPFQLETGYVGVGDSEEVQLFYYFVKSQGNPQTDPLMTWLAGGPGCSAFSGLAFEIGPINFKVEPYNGTVPQLILNPDAWTKKASILFIDSPVGTGFSYSRTLRGSKRGDFLQVEQIHQFLRKWLANHPEFISNPFYVGGDSYSGMIVPPITQAISEGNKHEVPLINLQGYVVGNPVSVRKTNDNSRIPYAYRLTLISTELYESLTNSCKGEYENVDPNNEECVNHVSTFKKCVSRINYWCISCPYCEDVSLAPQDKIGRRRSLYNTSQEVLLAMRVLPPPSLDCQEYKYYLSYYWTNDDQVRKALHIREGTIEEWIRCQNRKSYEYDIMSVVPYHANLSFKGYRSLVFSGDHDLMVPVIDTEAWVRSLSYPIVDDWRPWFNTEDQILGYTRTYANNMTFATIKGGGHTPEFMQTQSRIMFYRWIQGESL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38963128 38966830 + CrPI670011_05g028290.1 Cre05g2829 499342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2829 467 Pfam Serine carboxypeptidase 32 464 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2829 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2829 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2829 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2829 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2829 467 FunFam Serine carboxypeptidase-like 11 22 467 - -
Cre05g2829 467 FunFam Carboxypeptidase 321 466 - -
Cre05g2829 467 Gene3D alpha/beta hydrolase 28 467 IPR029058 -
Cre05g2829 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 460 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cre05g2829 467 SUPERFAMILY alpha/beta-Hydrolases 27 465 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0435 Cre-Chr4:15212209 Cre05g2829 Cre-Chr5:38963128 1.40E-183 dispersed
Cre05g2829 Cre-Chr5:38963128 Cre09g0750 Cre-Chr9:7339618 2.90E-92 dispersed
Cre05g2829 Cre-Chr5:38963128 Cre05g2830 Cre-Chr5:38969982 2.70E-162 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2829 K16296 - csv:101210918 543.502