Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2830 ATGGCCACCTTCGCCACCGTCCTTTTCCGATGCTCTGTTTTCCTCCTCCTACTTTTTCAGCTCTTCTCCGCCGCTGCCGCCACCGAAGGATCATACTCGAGGGTGAAGTATCTGCCGGGATTCTCAGGACCTCTTCCCTTCCAACTAGAAACTGGATACGTTGGTGTGGGAGATTCAGATCAATTTCAGATTTTTCACTATTTTATCAAATCTGAAGCAAATCCCAAAACGGATCCTCTCATTATTTGGCTTACCGGAGGTCCCGGTTGCTCTGCCCTCTCCGGACTTGCCTTTGAAATTGGTCCTATAAGTTTTGATGAAGAATCAAACGAAGGGAGCATTCCTGGATTAATCTTAAATCCCTATTCATGGACGAAGAAATGTAGCATAATATTTGTAGATTTACCTGCGGGGACTGGATTTTCGTATGATACAACTTCGTCTACCTTTAAACCGGGAGATTTTAATCAAATTCACCACTATCTTCAATTTTTGAGAAAGTGGTTTGTTGATCATCCAGAGTTTACAACAAATCCATTCTATATTGGCGGAGATTCATACTCTGGGATGATTGTTCCGGTAGTTGCTCAAAAAATTGTACAAGGAAATACACATGATTTTTCATTTATAAATTTTCAGGGCTATATATTGGGAAATCCTTACACTATTCGTGATTCAGGTGACAATTTTGCAATTCCTTTTGCTCATAGGATGACTCTTATATCTGATGAATTATTTGAGTCATTGAAAACTAGTTGTAAAGGAAAATATGTGAACATTGATCCAAGCAATGTGGAGTGTTTAAGACATTACGAGACGTATAAAAAGTGTATATCGAAAGTCGAGCCTGCAAATATTTTGGATCCAAAGTGTCAATTTCAGTCTCCAAAGCAACAAGATGTATATGATCGAAGATCTCTCAATAGCATCTCAAAGTCGTTGTTTGATCAAAGCACACCACTCTCCTTTCGTAGTTGTCCTGAGTTTAAATACAAACTTTCTAATGATTGGGCTAACGCGGATCCAGTTCGAAAGGCACTTCACATTCGTGAGGGAAGTATTGGAGAATGGATAAGATGTAAGAACAGAAAAGAAATGTATACTTTTGAACTTGATACTGTTTTCCCTTATCATGTGAACCTTAGTTCTAAAGGATATCGATCTTTGATCTATAGTGGCGATCATGATATGTTAGTGCCCCATTTGGACACTCAGGCATGGATCAAAGCTTTAAACTACTCCATTGTTGATGATTGGAGACCATGGTTTATCTTGGATCAAGTAGCCGGATATACCCGATACTATGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGGCACACAGCAGAATACACAAAAAGAGAATGCAGCATAATGTTTAGCAGATGGATATCAGGACAATCCTTATGA 1416 39.12 MATFATVLFRCSVFLLLLFQLFSAAAATEGSYSRVKYLPGFSGPLPFQLETGYVGVGDSDQFQIFHYFIKSEANPKTDPLIIWLTGGPGCSALSGLAFEIGPISFDEESNEGSIPGLILNPYSWTKKCSIIFVDLPAGTGFSYDTTSSTFKPGDFNQIHHYLQFLRKWFVDHPEFTTNPFYIGGDSYSGMIVPVVAQKIVQGNTHDFSFINFQGYILGNPYTIRDSGDNFAIPFAHRMTLISDELFESLKTSCKGKYVNIDPSNVECLRHYETYKKCISKVEPANILDPKCQFQSPKQQDVYDRRSLNSISKSLFDQSTPLSFRSCPEFKYKLSNDWANADPVRKALHIREGSIGEWIRCKNRKEMYTFELDTVFPYHVNLSSKGYRSLIYSGDHDMLVPHLDTQAWIKALNYSIVDDWRPWFILDQVAGYTRYYANKMTFATIKGGGHTAEYTKRECSIMFSRWISGQSL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38969982 38972704 + CrPI670011_05g028300.1 Cre05g2830 499343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2830 471 Pfam Serine carboxypeptidase 39 468 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2830 471 SUPERFAMILY alpha/beta-Hydrolases 35 470 IPR029058 -
Cre05g2830 471 Gene3D - 326 471 - -
Cre05g2830 471 Gene3D alpha/beta hydrolase 28 302 IPR029058 -
Cre05g2830 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 465 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cre05g2830 471 FunFam Serine carboxypeptidase-like 11 29 471 - -
Cre05g2830 471 FunFam Carboxypeptidase 325 470 - -
Cre05g2830 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2830 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2830 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2830 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2251 Cre-Chr5:34088894 Cre05g2830 Cre-Chr5:38969982 3.90E-163 dispersed
Cre05g2252 Cre-Chr5:34097919 Cre05g2830 Cre-Chr5:38969982 3.50E-180 dispersed
Cre05g2253 Cre-Chr5:34108120 Cre05g2830 Cre-Chr5:38969982 2.30E-35 dispersed
Cre05g2830 Cre-Chr5:38969982 Cre09g0750 Cre-Chr9:7339618 7.70E-93 dispersed
Cre05g2829 Cre-Chr5:38963128 Cre05g2830 Cre-Chr5:38969982 2.70E-162 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2830 K16296 - csv:101207623 595.89