Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2840 ATGGGTCTTTTTTGTCTTTCTGGGATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGGATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGCTGCTGCTGTTCTATTATCTATAGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTCGGTTTAGGAAGTTTGCGGGGACCTCACCTCATACTGAAAGCCCCTAGAGCTTTACCTGAAGCTGTCCTGATCTGTGTTGTTGAGATATCTAAGCTTCACCATAAGAATCCAGAACATGCAATCAGGGGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGACGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACGTAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGAGAACAAGCTCGGACATGAATTGTATTTATCTTGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCAAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAATTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAGGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 2418 43.3 MGLFCLSGMLLFSDVLFCIPFLGCLNVTLDVSGSLIGLLCAAAVLLSIGFNFLLVKFLYGVLGLGSLRGPHLILKAPRALPEAVLICVVEISKLHHKNPEHAIRGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTENKLGHELYLSWDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIQDGNKKPKPDSSIEERFDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGRIRQDISLKLQNVERGVLEMELECVPLSQ 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39042782 39054746 + CrPI670011_05g028400.1 Cre05g2840 499353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2840 805 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 648 742 IPR035892 -
Cre05g2840 805 ProSiteProfiles Zinc finger SIAH-type profile. 220 280 IPR013010 GO:0008270(InterPro)
Cre05g2840 805 FunFam E3 ubiquitin-protein ligase SINAT5-like 276 408 - -
Cre05g2840 805 ProSiteProfiles ARF GTPase-activating proteins domain profile. 449 563 IPR001164 GO:0005096(InterPro)
Cre05g2840 805 Pfam Putative GTPase activating protein for Arf 450 564 IPR001164 GO:0005096(InterPro)
Cre05g2840 805 Gene3D Arf GTPase activating protein 438 570 IPR038508 -
Cre05g2840 805 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 647 805 - -
Cre05g2840 805 Pfam C2 domain 650 738 IPR000008 -
Cre05g2840 805 ProSiteProfiles C2 domain profile. 631 747 IPR000008 -
Cre05g2840 805 FunFam E3 ubiquitin-protein ligase SINAT3 219 275 - -
Cre05g2840 805 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 445 805 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cre05g2840 805 CDD Sina 281 408 - -
Cre05g2840 805 FunFam stromal membrane-associated protein 1 isoform X1 438 569 - -
Cre05g2840 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 218 IPR013083 -
Cre05g2840 805 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 167 202 IPR049548 -
Cre05g2840 805 SUPERFAMILY ArfGap/RecO-like zinc finger 449 564 IPR037278 -
Cre05g2840 805 SMART C2_3c 650 745 IPR000008 -
Cre05g2840 805 ProSiteProfiles Zinc finger RING-type profile. 167 203 IPR001841 -
Cre05g2840 805 SMART arf_gap_3 449 570 IPR001164 GO:0005096(InterPro)
Cre05g2840 805 CDD RING-HC_SIAHs 165 203 - -
Cre05g2840 805 PRINTS HIV Rev interacting protein signature 501 522 IPR001164 GO:0005096(InterPro)
Cre05g2840 805 PRINTS HIV Rev interacting protein signature 480 497 IPR001164 GO:0005096(InterPro)
Cre05g2840 805 PRINTS HIV Rev interacting protein signature 461 480 IPR001164 GO:0005096(InterPro)
Cre05g2840 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 275 IPR013083 -
Cre05g2840 805 Gene3D C2 domain 648 802 IPR035892 -
Cre05g2840 805 CDD ArfGap 452 558 - -
Cre05g2840 805 FunFam E3 ubiquitin-protein ligase SINAT5-like 125 218 - -
Cre05g2840 805 CDD C2_ArfGAP 648 792 - -
Cre05g2840 805 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 276 408 IPR008974 GO:0005515(InterPro)
Cre05g2840 805 Pfam Sina, TRAF-like domain 311 408 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre05g2840 805 Pfam Sina, zinc finger 216 291 - -
Cre05g2840 805 SUPERFAMILY TRAF domain-like 220 408 - -
Cre05g2840 805 SUPERFAMILY RING/U-box 161 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0159 Cre-Chr4:4287043 Cre05g2840 Cre-Chr5:39042782 2.80E-129 dispersed
Cre05g2840 Cre-Chr5:39042782 Cre09g1760 Cre-Chr9:35969899 7.30E-168 dispersed
Cre05g2840 Cre-Chr5:39042782 Cre04g2119 Cre-Chr4:38444297 5.70E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2840 K04506 - csv:101221541 706.827