Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2843 | ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCACCATCATCATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGCAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA | 570 | 39.47 | MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVQLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39080935 | 39082436 | - | CrPI670011_05g028430.1 | Cre05g2843 | 499356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2843 | 189 | Gene3D | - | 11 | 186 | - | - | |
Cre05g2843 | 189 | ProSiteProfiles | Response regulatory domain profile. | 11 | 155 | IPR001789 | GO:0000160(InterPro) | |
Cre05g2843 | 189 | SMART | REC_2 | 10 | 151 | IPR001789 | GO:0000160(InterPro) | |
Cre05g2843 | 189 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
Cre05g2843 | 189 | MobiDBLite | consensus disorder prediction | 57 | 77 | - | - | |
Cre05g2843 | 189 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 179 | IPR045279 | GO:0009736(InterPro) | |
Cre05g2843 | 189 | SUPERFAMILY | CheY-like | 9 | 147 | IPR011006 | - | |
Cre05g2843 | 189 | Pfam | Response regulator receiver domain | 76 | 147 | IPR001789 | GO:0000160(InterPro) | |
Cre05g2843 | 189 | CDD | REC_typeA_ARR | 12 | 150 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2843 | Cre-Chr5:39080935 | Cre09g1785 | Cre-Chr9:36276213 | 4.10E-53 | dispersed | |
Cre05g2843 | Cre-Chr5:39080935 | Cre06g2534 | Cre-Chr6:32991425 | 1.20E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53811 | PF00072 | Response_reg | 6.90E-16 | CL0304 | Cre | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2843 | K14492 | - | csv:101207245 | 286.96 |