Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2843 ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCACCATCATCATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGCAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA 570 39.47 MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVQLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39080935 39082436 - CrPI670011_05g028430.1 Cre05g2843 499356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2843 189 Gene3D - 11 186 - -
Cre05g2843 189 ProSiteProfiles Response regulatory domain profile. 11 155 IPR001789 GO:0000160(InterPro)
Cre05g2843 189 SMART REC_2 10 151 IPR001789 GO:0000160(InterPro)
Cre05g2843 189 MobiDBLite consensus disorder prediction 170 189 - -
Cre05g2843 189 MobiDBLite consensus disorder prediction 57 77 - -
Cre05g2843 189 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 179 IPR045279 GO:0009736(InterPro)
Cre05g2843 189 SUPERFAMILY CheY-like 9 147 IPR011006 -
Cre05g2843 189 Pfam Response regulator receiver domain 76 147 IPR001789 GO:0000160(InterPro)
Cre05g2843 189 CDD REC_typeA_ARR 12 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2843 Cre-Chr5:39080935 Cre09g1785 Cre-Chr9:36276213 4.10E-53 dispersed
Cre05g2843 Cre-Chr5:39080935 Cre06g2534 Cre-Chr6:32991425 1.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53811 PF00072 Response_reg 6.90E-16 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2843 K14492 - csv:101207245 286.96