Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2856 ATGCCCTTGGTTTCCTTACCTTGCAGTATTACAGAGAACCTCAAAGTTTATGCCATGACTGATGTCAGTCCAAGGACTGATATTTCCACTGATGTCGACACCGATGAAAAATACCAGAGGCTCGATATGCTTCAACGGAATGTTGTGGCTTCTGATTCTAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGGGGCCATAGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGATTGTCGATGGCATATTGGCTCATTATGATGAGGTTTTTCGGCTAAAGGGTGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCCTCCCAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATATGTCTGGCAATGTGGCAAATTATATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACCCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAATTCGTCAGTCAGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTTTGGCTTGCTCGCCCAAAAGAGTGA 1050 45.81 MPLVSLPCSITENLKVYAMTDVSPRTDISTDVDTDEKYQRLDMLQRNVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAIAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNMSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTIRQSARALLAIHDYFSRLRALSSLWLARPKE 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39247209 39251292 + CrPI670011_05g028560.1 Cre05g2856 499369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2856 349 ProSiteProfiles DOG1 domain profile. 129 346 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre05g2856 349 Pfam bZIP transcription factor 64 104 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2856 349 CDD bZIP_HBP1b-like 64 116 - -
Cre05g2856 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2856 349 Pfam Seed dormancy control 146 221 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre05g2856 349 Coils Coil 83 110 - -
Cre05g2856 349 Gene3D - 63 115 - -
Cre05g2856 349 SMART brlzneu 60 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2856 349 SUPERFAMILY Leucine zipper domain 64 107 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2856 349 PANTHER TRANSCRIPTION FACTOR TGA9 39 349 - -
Cre05g2856 349 FunFam BZIP family transcription factor 63 112 - -
Cre05g2856 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2856 349 Coils Coil 140 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2856 Cre-Chr5:39247209 Cre08g1009 Cre-Chr8:23189625 5.10E-142 dispersed
Cre05g2856 Cre-Chr5:39247209 Cre01g1119 Cre-Chr1:20413933 8.50E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53815 PF14144 DOG1 5.40E-33 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2856 K14431 - csv:101216885 592.423