Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2865 ATGGTCACAGTGGAGAATGCAACAAATAAGAAAGAAGATCGTCTACCTAGAGAAGCAAGGGAGATTTTGCAGTCATTGGCTACCAAATGGGGAGATGAAATTGATTCTAGTGCATTGCAAATGATCCCTTTGAAGGGAGCCATGACCAATGAGGTCTTCCAAATCAAGTGGCCGACTAAGACAGAGGATGTCTCTAGAAAGGTTTTGGTTAGGATTTATGGTGAAGGTGTGGAAGTGTTTTTTAACCGAGAAGATGAGATAAAGACATTTGAATTTATGTCAAAGCACGGGCAGGGGCCTCGGCTTCTAGGGCGATTTTTAACTGGTCGAATTGAAGAGTTCATCCATGCAAGGACATTATCAGCTGTGGATCTTCGTGATTCAGAAATATCTTCTCTTATAGCCATTAAAATGAAGGAGTTCCATGATCTTGATATTCCAGGTCCGAAGAATGTGTGCTTGTGGAATAGATTGCGAAATTGGCTAACTGCTGCCAAAAAATGTTCCCCACCTGAAGAAGCCAAAGCCTTTCACTTGGATTCTATGCAAGAAGAGATATCTCTATTGGAAAAGGACCTCTTGGGTGATCATCAAAGTATAGGTTTTTGCCACAATGATCTACAGTATGGAAACATAATGCTAGACAAGGAGACTAGATCAATAACTATAATCGATTATGAATATGCAAGTTATAATCCCATAGCCTTTGACATTGCAAATCACTTCTGTGAAATGACTGCTGATTATCATACAGATACTCCGCATGTTTTGGACCACACCAAATATCCCGGTTTGGAGGAGCGTAAAAGATTTGTGCAAATATATCTGAGTGCTTCAGGTTATCAACCCAGTGATGCTGAGGTGGAGCAATTAGTCCAAGATGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTGGGGCCTCTGGGGAATTATATCGGAGCATGTGAACGATATCGACTTTGACTACATCGAATATGCGAGGCAGAGGTTTGAACAATATTGGTCTAGGAAACGTGATCTTCTGGGCCAACGTATTTCCCGGGGGAACCACCTGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTCCGGGCGCTGATTGCTGCAAATTCATGCTCGTTTCCGAGCCATAGAATCATTAGAAAGTCACAGAGACTCTTCAATCAAAGTGCTTCCAATCTAGTTTTCACGGTCAGAGCTTCATCTGAAGATTCCGAATGCAATGTCGACGAATGTGCTCCAGATAAAGAGGTGGGGAAAATAAGTATGGAATGGCTAGCTGGGGAGAAAACTAAAGTGGTTGGGACATACCCACCGACGAAAAAAGGGTGGACTGGCTACGTAGAGAAGGACACTGCAGGACAAACAAATATATATTCCGTCGAACCAGTAGTTTATGTAGCAGAAAGTGCTATAAGCTCGGGGACTGCAGGTTCTTCTTCTGAAGGAGCTGAGAACACACTGGCAATTGCTGGTGGAATGGCACTCATTGCGGTTGCTGCAGCTTCATCTATACTGCTTCAAGTTGGTAAGAAACCACCTGAAGTGAAAACCGTTGAATACACTGGACCCTCACTCAGTTACTATATTAACAAGTTCAATACACGAGAAATTGTCCAACAACCGGTACAAAGTGAACCCGAATCGTCCTCTCAAGTCGACAGCGTCGCTCCTGAAGTAACGGAGATTCAAATTCAATCAGACATTGCTGCTCCTGAAGTAACGGATATTCAAGTTGAGTCCCAAACGGCAGAGCCATCCTCTTCGGCTGTAGTCAGTGTCTCTTGGGGTAGTAATGGAAAGATGAGGGTTGAATCAGTTAAATGCACATTTAATATGGGCCCTCGGGCTCAAGCCCCCTTAATTAAGTTTCCACGGAGAAAGCCGGCCACTGGAAGGGTTTCTTTACTGGATCTGCAAGTTGGTGCGTTTTTTGCTCCCTCTGCCGTCGAGTGCTGTGGTGATTTTCGTACTATGAATTCCTTGGTTACTCCTAGCACTGTACTCATGGAAAGCGTGGAGGAAACGAAGCCATCAGCTACAAATAGTTGCCATACTGATGGCGGAACAAACACTGCAGACGTTCAATTTTCAGGATTGTGTCAGAATGGACTACATCTGGATGAGAATTGTTGTAATCAAGCATTAAAGTTATTTAGAGAGACGAAGCACCTTTTGGTTGCAAATATATCAGCAATCGGGAGTGGAATTCCTGAAGAAGCTGAACGTTTTTGGTCTGCCTTTGTTTTATATACTATGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCGCATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAACTGAATATCGTGGAATTTTTTAAAGAGCTGCCGCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCCACCGGTTACTTATCTGATTACCATCGCTTTGGATGGTTATTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAACTTCAGCATTCTTGACTCTGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAAGGAAGTTATGGAGAAGGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGGATTTTTGTTAGTGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCAGTGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCGCATGCCAATGGCACTCTTAATAGTGGTAATGCAAAAGTTGCTGCCACACCTGTTAGCACAGCCATGACAACAGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGTAGGGCGCATATTATACTTGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTTACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCTGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTAATGGAAAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGACTTTTAGAGAGTATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCAATTCAAATTAACTTTTCTGGTATGGGGGTATCAACCATGCCTAATCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGATCGCCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCGGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCATCAAGTTGGCTGCTGTGAGAGTCAACGGTATGGTGGAAAGGTTGCAGTTATCTCATCTGATCAGGGAGAATGTCTACTGCCTTTTCCAGCAGATACTCAGTCAAAAGACATCACTATTATTTAACCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTGAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAGCTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCATGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCGAAAAGCTACTACGCTTGCGTTGGAGAGAGCACCCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATGGTACGCGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTAAGTGATTCCCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 5109 42.71 MVTVENATNKKEDRLPREAREILQSLATKWGDEIDSSALQMIPLKGAMTNEVFQIKWPTKTEDVSRKVLVRIYGEGVEVFFNREDEIKTFEFMSKHGQGPRLLGRFLTGRIEEFIHARTLSAVDLRDSEISSLIAIKMKEFHDLDIPGPKNVCLWNRLRNWLTAAKKCSPPEEAKAFHLDSMQEEISLLEKDLLGDHQSIGFCHNDLQYGNIMLDKETRSITIIDYEYASYNPIAFDIANHFCEMTADYHTDTPHVLDHTKYPGLEERKRFVQIYLSASGYQPSDAEVEQLVQDVEKYTLASHLVWGLWGIISEHVNDIDFDYIEYARQRFEQYWSRKRDLLGQRISRGNHLERDVFMSATEAQAHGIVDLVAVRALIAANSCSFPSHRIIRKSQRLFNQSASNLVFTVRASSEDSECNVDECAPDKEVGKISMEWLAGEKTKVVGTYPPTKKGWTGYVEKDTAGQTNIYSVEPVVYVAESAISSGTAGSSSEGAENTLAIAGGMALIAVAAASSILLQVGKKPPEVKTVEYTGPSLSYYINKFNTREIVQQPVQSEPESSSQVDSVAPEVTEIQIQSDIAAPEVTDIQVESQTAEPSSSAVVSVSWGSNGKMRVESVKCTFNMGPRAQAPLIKFPRRKPATGRVSLLDLQVGAFFAPSAVECCGDFRTMNSLVTPSTVLMESVEETKPSATNSCHTDGGTNTADVQFSGLCQNGLHLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYTMKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHIPVRFRNFSILDSERFVKKGGKGVDLLGSLCNVYDTSEEELKEVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAICNKGELDERIFVSDEDSLLGSGSLSAGAVTMGGIKRKFDSVCSPARTITSPMSPLRSPASHANGTLNSGNAKVAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVMERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAIQINFSGMGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHLIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKADRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39373162 39393350 - CrPI670011_05g028650.1 Cre05g2865 499378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2865 1702 Coils Coil 1011 1031 - -
Cre05g2865 1702 FunFam Retinoblastoma-related protein 1 1373 1583 - -
Cre05g2865 1702 SUPERFAMILY Protein kinase-like (PK-like) 9 339 IPR011009 -
Cre05g2865 1702 FunFam Retinoblastoma-related protein 1 877 1035 - -
Cre05g2865 1702 Pfam Domain of unknown function (DUF3452) 778 916 IPR024599 -
Cre05g2865 1702 Pfam Choline/ethanolamine kinase 66 266 - -
Cre05g2865 1702 MobiDBLite consensus disorder prediction 1566 1580 - -
Cre05g2865 1702 Pfam Retinoblastoma-associated protein B domain 1423 1550 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Cre05g2865 1702 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 686 1699 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Cre05g2865 1702 MobiDBLite consensus disorder prediction 1565 1596 - -
Cre05g2865 1702 Coils Coil 950 974 - -
Cre05g2865 1702 Gene3D - 1101 1289 - -
Cre05g2865 1702 Gene3D - 877 1035 - -
Cre05g2865 1702 SUPERFAMILY Cyclin-like 1421 1590 IPR036915 -
Cre05g2865 1702 CDD ETNK_euk 43 337 - -
Cre05g2865 1702 Pfam Retinoblastoma-associated protein A domain 1098 1299 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cre05g2865 1702 Gene3D Phosphorylase Kinase; domain 1 28 114 - -
Cre05g2865 1702 Gene3D - 74 335 - -
Cre05g2865 1702 CDD CYCLIN_AtRBR_like 1423 1554 - -
Cre05g2865 1702 SMART RB_A_2 1098 1299 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cre05g2865 1702 FunFam Retinoblastoma-related protein 1 1101 1289 - -
Cre05g2865 1702 MobiDBLite consensus disorder prediction 1071 1090 - -
Cre05g2865 1702 SMART DUF3452_2 767 916 IPR024599 -
Cre05g2865 1702 Gene3D - 1385 1576 - -
Cre05g2865 1702 SUPERFAMILY Cyclin-like 1106 1301 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1602 Cre-Chr5:25430171 Cre05g2865 Cre-Chr5:39373162 1.10E-183 dispersed
Cre05g2865 Cre-Chr5:39373162 Cre09g0968 Cre-Chr9:9974070 6.10E-132 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53816 PF01858 RB_A 2.70E-63 CL0065 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2865 K04681 - csv:101219810 1912.12