Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0780 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGCGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAACCCCACCGGCGGCATCGGCAGCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGTGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGTTGAAGGATGAATTGGACCGGGTTTGTGCACTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTTGGGAGTTTGACCATGGCAACGTCAATGCCTATTGGGCCTGATTTCGGAGGTGGGTTGTCAGGCAATCTGGCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACGGAAGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGAGAAATACTGAACCAGGAGGAGTACATAAGGACATTCACTCCTTGCATAGGTATGAAACCAAATGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTCGTGGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGGGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGCGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCACAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACACTGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCCCAGCGGATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACACGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2511 54.08 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGSGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTEEPLWIGSLEGGREILNQEEYIRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1186091 1190934 - CrPI670011_06g007800.1 Cre06g0780 500242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0780 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Cre06g0780 836 CDD START_ArGLABRA2_like 337 567 - -
Cre06g0780 836 Gene3D - 121 207 - -
Cre06g0780 836 MobiDBLite consensus disorder prediction 95 114 - -
Cre06g0780 836 Coils Coil 185 217 - -
Cre06g0780 836 SMART START_1 342 568 IPR002913 GO:0008289(InterPro)
Cre06g0780 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cre06g0780 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 567 - -
Cre06g0780 836 SUPERFAMILY Bet v1-like 596 829 - -
Cre06g0780 836 SUPERFAMILY Bet v1-like 335 568 - -
Cre06g0780 836 Pfam START domain 342 568 IPR002913 GO:0008289(InterPro)
Cre06g0780 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Cre06g0780 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre06g0780 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Cre06g0780 836 ProSiteProfiles START domain profile. 333 571 IPR002913 GO:0008289(InterPro)
Cre06g0780 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Cre06g0780 836 Coils Coil 232 252 - -
Cre06g0780 836 MobiDBLite consensus disorder prediction 94 141 - -
Cre06g0780 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Cre06g0780 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0518 Cre-Chr2:2255819 Cre06g0780 Cre-Chr6:1186091 1.90E-207 dispersed
Cre03g0778 Cre-Chr3:6601693 Cre06g0780 Cre-Chr6:1186091 3.40E-188 dispersed
Cre04g1828 Cre-Chr4:36064537 Cre06g0780 Cre-Chr6:1186091 7.10E-191 dispersed
Cre05g1571 Cre-Chr5:24136653 Cre06g0780 Cre-Chr6:1186091 1.10E-77 dispersed
Cre06g0780 Cre-Chr6:1186091 Cre07g1671 Cre-Chr7:32164351 4.90E-151 dispersed
Cre01g1598 Cre-Chr1:29049219 Cre06g0780 Cre-Chr6:1186091 2.90E-189 transposed
Cre05g1245 Cre-Chr5:12423994 Cre06g0780 Cre-Chr6:1186091 2.20E-131 transposed
Cre09g1114 Cre-Chr9:11791150 Cre06g0780 Cre-Chr6:1186091 7.10E-171 transposed
Cre05g0260 Cre-Chr5:2446888 Cre06g0780 Cre-Chr6:1186091 4.00E-269 wgd
Cre05g0978 Cre-Chr5:9008584 Cre06g0780 Cre-Chr6:1186091 8.10E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53817 PF01852 START 5.40E-58 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0780 K09338 - csv:101222248 1544.64