Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g0793 | ATGGCCGATACTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGCCCACCCATCTCCCTATCAATGACTCTGAATCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCGCCCAAGAGAGCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGCCTCGAACGGCGTCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTTGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA | 1029 | 57.05 | MADTQKQELDDDDDSPPTHLPINDSESSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVQAGTVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH | 342 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1292256 | 1293284 | + | CrPI670011_06g007930.1 | Cre06g0793 | 500255 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g0793 | 342 | MobiDBLite | consensus disorder prediction | 151 | 178 | - | - | |
| Cre06g0793 | 342 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Cre06g0793 | 342 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
| Cre06g0793 | 342 | MobiDBLite | consensus disorder prediction | 263 | 315 | - | - | |
| Cre06g0793 | 342 | Pfam | TCP family transcription factor | 76 | 172 | IPR017887 | - | |
| Cre06g0793 | 342 | ProSiteProfiles | TCP domain profile. | 77 | 131 | IPR017887 | - | |
| Cre06g0793 | 342 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Cre06g0793 | 342 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 53 | 294 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre06g0793 | Cre-Chr6:1292256 | Cre06g2493 | Cre-Chr6:32663957 | 7.40E-29 | dispersed | |
| Cre05g0956 | Cre-Chr5:8825065 | Cre06g0793 | Cre-Chr6:1292256 | 2.10E-47 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53819 | PF03634 | TCP | 5.70E-30 | No_clan | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g0793 | - | - | - | 0.0 |