Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0808 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTCGATTCCCTCACTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGAACAACAGGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 57.14 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLTAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAEQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1427099 1427938 - CrPI670011_06g008080.1 Cre06g0808 500270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0808 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Cre06g0808 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 239 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cre06g0808 279 MobiDBLite consensus disorder prediction 55 71 - -
Cre06g0808 279 MobiDBLite consensus disorder prediction 215 242 - -
Cre06g0808 279 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Cre06g0808 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Cre06g0808 279 Gene3D - 94 226 - -
Cre06g0808 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cre06g0808 279 CDD DUF296 95 206 IPR005175 -
Cre06g0808 279 MobiDBLite consensus disorder prediction 28 85 - -
Cre06g0808 279 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0808 Cre-Chr6:1427099 Cre09g2174 Cre-Chr9:40811400 1.10E-73 dispersed
Cre02g0655 Cre-Chr2:3479554 Cre06g0808 Cre-Chr6:1427099 1.60E-58 transposed
Cre05g0299 Cre-Chr5:2770840 Cre06g0808 Cre-Chr6:1427099 3.80E-68 wgd
Cre05g0923 Cre-Chr5:8458372 Cre06g0808 Cre-Chr6:1427099 2.20E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0808 - - - 0.0