Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g0810 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGAGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCGGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGACGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGTCTCCGGGACCCAGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGCCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA | 723 | 61.41 | MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPPQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1446945 | 1449842 | - | CrPI670011_06g008100.1 | Cre06g0810 | 500272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g0810 | 240 | MobiDBLite | consensus disorder prediction | 134 | 161 | - | - | |
Cre06g0810 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 29 | 127 | IPR004883 | - | |
Cre06g0810 | 240 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 26 | 146 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Cre06g0810 | 240 | MobiDBLite | consensus disorder prediction | 135 | 158 | - | - | |
Cre06g0810 | 240 | MobiDBLite | consensus disorder prediction | 185 | 219 | - | - | |
Cre06g0810 | 240 | ProSiteProfiles | LOB domain profile. | 28 | 130 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g0810 | Cre-Chr6:1446945 | Cre07g0455 | Cre-Chr7:2314966 | 4.90E-43 | dispersed | |
Cre06g0810 | Cre-Chr6:1446945 | Cre06g0811 | Cre-Chr6:1464890 | 1.90E-39 | tandem | |
Cre05g1293 | Cre-Chr5:13420157 | Cre06g0810 | Cre-Chr6:1446945 | 1.80E-22 | transposed | |
Cre07g0702 | Cre-Chr7:4940955 | Cre06g0810 | Cre-Chr6:1446945 | 3.40E-35 | transposed | |
Cre09g0763 | Cre-Chr9:7479801 | Cre06g0810 | Cre-Chr6:1446945 | 5.60E-39 | transposed | |
Cre10g1714 | Cre-Chr10:31355825 | Cre06g0810 | Cre-Chr6:1446945 | 1.70E-37 | transposed | |
Cre05g0303 | Cre-Chr5:2809150 | Cre06g0810 | Cre-Chr6:1446945 | 2.80E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53822 | PF03195 | LOB | 2.70E-38 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g0810 | K21994 | - | csv:101220603 | 373.244 |