Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0810 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGAGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCGGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGACGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGTCTCCGGGACCCAGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGCCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 61.41 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPPQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1446945 1449842 - CrPI670011_06g008100.1 Cre06g0810 500272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0810 240 MobiDBLite consensus disorder prediction 134 161 - -
Cre06g0810 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Cre06g0810 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 146 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre06g0810 240 MobiDBLite consensus disorder prediction 135 158 - -
Cre06g0810 240 MobiDBLite consensus disorder prediction 185 219 - -
Cre06g0810 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0810 Cre-Chr6:1446945 Cre07g0455 Cre-Chr7:2314966 4.90E-43 dispersed
Cre06g0810 Cre-Chr6:1446945 Cre06g0811 Cre-Chr6:1464890 1.90E-39 tandem
Cre05g1293 Cre-Chr5:13420157 Cre06g0810 Cre-Chr6:1446945 1.80E-22 transposed
Cre07g0702 Cre-Chr7:4940955 Cre06g0810 Cre-Chr6:1446945 3.40E-35 transposed
Cre09g0763 Cre-Chr9:7479801 Cre06g0810 Cre-Chr6:1446945 5.60E-39 transposed
Cre10g1714 Cre-Chr10:31355825 Cre06g0810 Cre-Chr6:1446945 1.70E-37 transposed
Cre05g0303 Cre-Chr5:2809150 Cre06g0810 Cre-Chr6:1446945 2.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53822 PF03195 LOB 2.70E-38 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0810 K21994 - csv:101220603 373.244