Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0811 ATGACCCACACCCACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCGGCGGCGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTCGACTCCGAGCAAGGCGCCGCCCACTTTGCCGCCGTGCATAAGGTATTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGACCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTTACAGGACGCATCACTGCCCACTCGCGACGCCCTGCTCCCGGAAACGATACCGGGCTCCGACATGGGTTTGATGTCCAACGTTCCAATGCTCCTTGATCCCCTCCAAACGCAGCTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGTGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTACTTGCCCGAAGTACGACACCGGCCGCCGTGCTCACAGATTTAA 675 53.78 MTHTHTPIGLHQEALMSGGGGGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPLQDASLPTRDALLPETIPGSDMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRYLPEVRHRPPCSQI 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1464890 1468465 + CrPI670011_06g008110.1 Cre06g0811 500273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0811 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 140 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre06g0811 224 Pfam Lateral organ boundaries (LOB) domain 25 123 IPR004883 -
Cre06g0811 224 ProSiteProfiles LOB domain profile. 24 126 IPR004883 -
Cre06g0811 224 Coils Coil 112 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1293 Cre-Chr5:13420157 Cre06g0811 Cre-Chr6:1464890 4.50E-29 dispersed
Cre06g0811 Cre-Chr6:1464890 Cre07g0456 Cre-Chr7:2324896 1.10E-33 dispersed
Cre06g0810 Cre-Chr6:1446945 Cre06g0811 Cre-Chr6:1464890 1.90E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53823 PF03195 LOB 2.70E-36 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0811 - - - 0.0