Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g0821 | ATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTCCCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCCTCACTCTCAGGTCCCAATTTGCTGGAGTCTTTCGCGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACCGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGACGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGTGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCTTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAGTCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCCAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTACTCCCTCAGCTATGAACTCACTGGTGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGGTACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCTCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGACCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATTGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAATGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGACGACGACTTTTAG | 3366 | 45.57 | MRRDERQEVVARSRIGPNIHRFPQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLESFASSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRSPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF | 1121 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1522910 | 1537491 | - | CrPI670011_06g008210.1 | Cre06g0821 | 500283 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g0821 | 1121 | MobiDBLite | consensus disorder prediction | 25 | 67 | - | - | |
Cre06g0821 | 1121 | Pfam | Kinase associated domain 1 | 534 | 575 | IPR001772 | - | |
Cre06g0821 | 1121 | FunFam | 26S proteasome non-ATPase regulatory subunit 3 | 754 | 1077 | - | - | |
Cre06g0821 | 1121 | Coils | Coil | 1088 | 1115 | - | - | |
Cre06g0821 | 1121 | MobiDBLite | consensus disorder prediction | 1085 | 1114 | - | - | |
Cre06g0821 | 1121 | FunFam | Non-specific serine/threonine protein kinase | 71 | 160 | - | - | |
Cre06g0821 | 1121 | MobiDBLite | consensus disorder prediction | 1085 | 1121 | - | - | |
Cre06g0821 | 1121 | ProSiteProfiles | Protein kinase domain profile. | 81 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre06g0821 | 1121 | Gene3D | Transferase(Phosphotransferase) domain 1 | 74 | 412 | - | - | |
Cre06g0821 | 1121 | Pfam | Protein kinase domain | 81 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre06g0821 | 1121 | SMART | uba_6 | 356 | 393 | IPR015940 | - | |
Cre06g0821 | 1121 | Pfam | UBA/TS-N domain | 355 | 391 | IPR015940 | - | |
Cre06g0821 | 1121 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 200 | 212 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre06g0821 | 1121 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
Cre06g0821 | 1121 | SUPERFAMILY | Protein kinase-like (PK-like) | 78 | 334 | IPR011009 | - | |
Cre06g0821 | 1121 | Gene3D | Kinase associated domain 1, KA1 | 457 | 576 | - | - | |
Cre06g0821 | 1121 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 354 | 394 | IPR015940 | - | |
Cre06g0821 | 1121 | Gene3D | - | 888 | 1073 | - | - | |
Cre06g0821 | 1121 | SMART | serkin_6 | 81 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre06g0821 | 1121 | SUPERFAMILY | KA1-like | 390 | 576 | IPR028375 | - | |
Cre06g0821 | 1121 | CDD | AMPKA_C | 451 | 574 | - | - | |
Cre06g0821 | 1121 | ProSiteProfiles | PCI domain profile. | 873 | 1054 | IPR000717 | - | |
Cre06g0821 | 1121 | Pfam | Proteasome regulatory subunit C-terminal | 1054 | 1120 | IPR013586 | GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro) | |
Cre06g0821 | 1121 | CDD | STKc_AMPK_alpha | 78 | 333 | - | - | |
Cre06g0821 | 1121 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 979 | 1072 | IPR000717 | - | |
Cre06g0821 | 1121 | Pfam | PCI domain | 971 | 1050 | IPR000717 | - | |
Cre06g0821 | 1121 | ProSitePatterns | Protein kinases ATP-binding region signature. | 87 | 110 | IPR017441 | GO:0005524(InterPro) | |
Cre06g0821 | 1121 | FunFam | Non-specific serine/threonine protein kinase | 72 | 411 | - | - | |
Cre06g0821 | 1121 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 637 | 1117 | IPR050756 | GO:0006511(PANTHER)|GO:0008541(PANTHER) | |
Cre06g0821 | 1121 | CDD | UBA_SnRK1_plant | 355 | 395 | - | - | |
Cre06g0821 | 1121 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 528 | 576 | IPR001772 | - | |
Cre06g0821 | 1121 | SMART | PCI/PINT associated module | 808 | 979 | - | - | |
Cre06g0821 | 1121 | FunFam | Non-specific serine/threonine protein kinase | 457 | 575 | - | - | |
Cre06g0821 | 1121 | SUPERFAMILY | Winged helix DNA-binding domain | 981 | 1055 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0755 | Cre-Chr2:4410798 | Cre06g0821 | Cre-Chr6:1522910 | 2.60E-253 | dispersed | |
Cre02g2416 | Cre-Chr2:37529971 | Cre06g0821 | Cre-Chr6:1522910 | 7.40E-39 | dispersed | |
Cre04g1478 | Cre-Chr4:33577679 | Cre06g0821 | Cre-Chr6:1522910 | 2.50E-56 | dispersed | |
Cre06g0821 | Cre-Chr6:1522910 | Cre08g1128 | Cre-Chr8:24453921 | 3.40E-70 | dispersed | |
Cre06g0821 | Cre-Chr6:1522910 | Cre11g0554 | Cre-Chr11:2560297 | 4.20E-190 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64187 | PF00069 | Pkinase | 1.30E-79 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g0821 | K07198 | - | csv:101211720 | 1009.59 |