Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0821 ATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTCCCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCCTCACTCTCAGGTCCCAATTTGCTGGAGTCTTTCGCGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACCGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGACGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGTGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCTTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAGTCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCCAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTACTCCCTCAGCTATGAACTCACTGGTGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGGTACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCTCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGACCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATTGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAATGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGACGACGACTTTTAG 3366 45.57 MRRDERQEVVARSRIGPNIHRFPQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLESFASSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRSPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1522910 1537491 - CrPI670011_06g008210.1 Cre06g0821 500283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0821 1121 MobiDBLite consensus disorder prediction 25 67 - -
Cre06g0821 1121 Pfam Kinase associated domain 1 534 575 IPR001772 -
Cre06g0821 1121 FunFam 26S proteasome non-ATPase regulatory subunit 3 754 1077 - -
Cre06g0821 1121 Coils Coil 1088 1115 - -
Cre06g0821 1121 MobiDBLite consensus disorder prediction 1085 1114 - -
Cre06g0821 1121 FunFam Non-specific serine/threonine protein kinase 71 160 - -
Cre06g0821 1121 MobiDBLite consensus disorder prediction 1085 1121 - -
Cre06g0821 1121 ProSiteProfiles Protein kinase domain profile. 81 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g0821 1121 Gene3D Transferase(Phosphotransferase) domain 1 74 412 - -
Cre06g0821 1121 Pfam Protein kinase domain 81 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g0821 1121 SMART uba_6 356 393 IPR015940 -
Cre06g0821 1121 Pfam UBA/TS-N domain 355 391 IPR015940 -
Cre06g0821 1121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g0821 1121 MobiDBLite consensus disorder prediction 1 74 - -
Cre06g0821 1121 SUPERFAMILY Protein kinase-like (PK-like) 78 334 IPR011009 -
Cre06g0821 1121 Gene3D Kinase associated domain 1, KA1 457 576 - -
Cre06g0821 1121 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 394 IPR015940 -
Cre06g0821 1121 Gene3D - 888 1073 - -
Cre06g0821 1121 SMART serkin_6 81 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g0821 1121 SUPERFAMILY KA1-like 390 576 IPR028375 -
Cre06g0821 1121 CDD AMPKA_C 451 574 - -
Cre06g0821 1121 ProSiteProfiles PCI domain profile. 873 1054 IPR000717 -
Cre06g0821 1121 Pfam Proteasome regulatory subunit C-terminal 1054 1120 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Cre06g0821 1121 CDD STKc_AMPK_alpha 78 333 - -
Cre06g0821 1121 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 979 1072 IPR000717 -
Cre06g0821 1121 Pfam PCI domain 971 1050 IPR000717 -
Cre06g0821 1121 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524(InterPro)
Cre06g0821 1121 FunFam Non-specific serine/threonine protein kinase 72 411 - -
Cre06g0821 1121 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 637 1117 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Cre06g0821 1121 CDD UBA_SnRK1_plant 355 395 - -
Cre06g0821 1121 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 528 576 IPR001772 -
Cre06g0821 1121 SMART PCI/PINT associated module 808 979 - -
Cre06g0821 1121 FunFam Non-specific serine/threonine protein kinase 457 575 - -
Cre06g0821 1121 SUPERFAMILY Winged helix DNA-binding domain 981 1055 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0755 Cre-Chr2:4410798 Cre06g0821 Cre-Chr6:1522910 2.60E-253 dispersed
Cre02g2416 Cre-Chr2:37529971 Cre06g0821 Cre-Chr6:1522910 7.40E-39 dispersed
Cre04g1478 Cre-Chr4:33577679 Cre06g0821 Cre-Chr6:1522910 2.50E-56 dispersed
Cre06g0821 Cre-Chr6:1522910 Cre08g1128 Cre-Chr8:24453921 3.40E-70 dispersed
Cre06g0821 Cre-Chr6:1522910 Cre11g0554 Cre-Chr11:2560297 4.20E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64187 PF00069 Pkinase 1.30E-79 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0821 K07198 - csv:101211720 1009.59