Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0825 ATGAATATTAAGTCCGGAGCTTCGAGAAATTCAATCGGTTGGAATTTCGGCGTCCACGTCAGACGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTATCCATCGCCCTCACTCTCAGGTTTTCTTCTCCTCTTTCTCCTACATCACTTTCAGAATGATTTATTCTGTATTCACGGACATTCGGAACGCCGATTCTCGTTTCGTATCTCGTTCTTGTCCGTCTTTGTTTTGCATTAATCGATTAGCTCCAATTCTAGATCTGGCTTTTCAAGCATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 1101 44.69 MNIKSGASRNSIGWNFGVHVRRSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTIHRPHSQVFFSSFSYITFRMIYSVFTDIRNADSRFVSRSCPSLFCINRLAPILDLAFQALQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDPGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1572091 1578237 - CrPI670011_06g008250.1 Cre06g0825 500287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0825 366 Gene3D - 281 345 - -
Cre06g0825 366 Pfam SNARE domain 311 362 IPR000727 -
Cre06g0825 366 CDD SNARE_NTD_AtSYP61-like 125 222 - -
Cre06g0825 366 ProSitePatterns Syntaxin / epimorphin family signature. 280 319 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre06g0825 366 Pfam Syntaxin 6, N-terminal 126 219 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cre06g0825 366 SUPERFAMILY SNARE fusion complex 273 336 - -
Cre06g0825 366 CDD SNARE_Qc 277 334 - -
Cre06g0825 366 FunFam syntaxin-61 isoform X1 277 338 - -
Cre06g0825 366 SUPERFAMILY DNA repair protein MutS, domain III 43 159 IPR036187 -
Cre06g0825 366 SUPERFAMILY t-snare proteins 125 220 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre06g0825 366 FunFam Syntaxin 10 123 225 - -
Cre06g0825 366 PANTHER SYNTAXIN 128 353 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre06g0825 366 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 274 336 IPR000727 -
Cre06g0825 366 SMART tSNARE_6 269 336 IPR000727 -
Cre06g0825 366 Gene3D - 122 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0825 Cre-Chr6:1572091 Cre10g0700 Cre-Chr10:6707462 7.20E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0825 K08500 - csv:101212527 418.698