Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0843 ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACCTAGAATCTCCCCCAACTTCTGACCATGTCAACCACTTCAACGGCAGCGGCGGCTCCGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCACGGGGTCGCCCGGCCGGCTCCAAGAACAAGCCCAAGCCACCCGTGATCATCACGCGCGAGAGCGCCAACACGCTCCGAGCTCATATCTTGGAGGTCGGTGGCGGATGCGACGTCTTCGAGGCGGTGGCCGGCTATGCTCGACGACGACAACGGGGGATCTGTGTGTTGAGTGGGAGTGGGATTGTGAATAATGTTAGCTTGCGACAACCGGCGGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCCTACCGCCGCCTGCTCCGCCAGGTGCAACCAGTCTTACAATTTTCTTGGCCGGAGGACAAGGGCAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATAGCATCGTCATTTAGTAACGTTGCATACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGCGGGTGGAGGCGACGGTGACGGAGGCGACGGTGGCGGTGACGGTCACAACAACCCTTTTCCTGATGCATCTTCGGGTTTGCCGTTTCTAAATCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA 759 56.92 MATLNLGSASHFVDQLQQRPDLHLESPPTSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGGDGDGGDGGGDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1739630 1740785 + CrPI670011_06g008430.1 Cre06g0843 500305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0843 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 208 - -
Cre06g0843 252 Gene3D - 78 208 - -
Cre06g0843 252 CDD DUF296 79 162 IPR005175 -
Cre06g0843 252 FunFam AT-hook motif nuclear-localized protein 78 205 - -
Cre06g0843 252 MobiDBLite consensus disorder prediction 205 240 - -
Cre06g0843 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 191 IPR005175 -
Cre06g0843 252 MobiDBLite consensus disorder prediction 22 68 - -
Cre06g0843 252 PIRSF ESCAROLA 4 250 IPR014476 GO:0003680(InterPro)
Cre06g0843 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 214 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre06g0843 252 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0843 Cre-Chr6:1739630 Cre09g1156 Cre-Chr9:12775472 2.60E-79 dispersed
Cre05g0345 Cre-Chr5:3171780 Cre06g0843 Cre-Chr6:1739630 1.10E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0843 - - - 0.0