Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0863 ATGTTGCCAGTTGCTATACCTTTTCCTCTTCTTTTTTGGCTGGCTCAACTCACTTTCTTCCTTCTGCCTTTTCCTAGGGCTTTCTCCACCAACTTCAGCTTTGTTCTCCTCTCAACCGAGATGGAAGTGCAAGATCATGGTCACATAATTGAAGTGTGTGGAGATGTGCAAGCTGTAGGGCCTAGCACTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAGCAGTTCAAAAGATGCAAAGGAGCGATCTGCGTCTATGCGGAAGCTTTGCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAGTCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTCGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATCGTCCGACTTATAAATGGTCCGGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCGACATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGGCCATGGTCATGGCGGCCATGAACATGGTGATGAAGATCATAGGCATCATCATGGAATAAGTGTGACCACCCACCACCATCACCACCACCACCACCACCACCACCACCATCATGGAGAAGAGAAGGGAGCTGGCAGCGAAGGTGTTGAGCAGCAGCAGCAGCTTCATGACCACAAGGAATCAGTAGCTACACCCTTGCTTGAGAGTTGTGTTGACGACGGAAATCCTTCACAAAAGGTTACCAAGACGCAAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGCGGGGCAATCATATGGTATAAACCGGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTTTTGATGGAGAGCACGCCGCGAGAGGTGGACGCAACAAAACTTGAGAAGGGTTTGTGCGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCCGACATGGTATTGGACAAGTTGTGTAGGTGTTGA 1362 46.18 MLPVAIPFPLLFWLAQLTFFLLPFPRAFSTNFSFVLLSTEMEVQDHGHIIEVCGDVQAVGPSTVGSKICGDAPSCGFSDAKSSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHGHGHGGHEHGDEDHRHHHGISVTTHHHHHHHHHHHHHHGEEKGAGSEGVEQQQQLHDHKESVATPLLESCVDDGNPSQKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKLCRC 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1932335 1938943 - CrPI670011_06g008630.1 Cre06g0863 500325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0863 453 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 63 260 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Cre06g0863 453 MobiDBLite consensus disorder prediction 258 277 - -
Cre06g0863 453 SUPERFAMILY Cation efflux protein transmembrane domain-like 91 392 IPR027469 -
Cre06g0863 453 MobiDBLite consensus disorder prediction 224 297 - -
Cre06g0863 453 Pfam Cation efflux family 98 391 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre06g0863 453 Gene3D Cation efflux protein transmembrane domain 93 390 IPR027469 -
Cre06g0863 453 MobiDBLite consensus disorder prediction 237 257 - -
Cre06g0863 453 NCBIfam cation diffusion facilitator family transporter 94 445 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0434 Cre-Chr3:2754731 Cre06g0863 Cre-Chr6:1932335 1.40E-68 dispersed
Cre06g0863 Cre-Chr6:1932335 Cre10g1601 Cre-Chr10:30123341 8.40E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0863 K14689 - csv:101213602 603.208