Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0866 ATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTTTCTCTATCCCCTTCTTTCTCCAAGAGTTCATGGGTTCGTTGATCTTCGAGTAGGAAAGGGGGTAAGAGGGGTTTCCGGGAATCTATTGAAAATTGGTGTGGTAGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACCGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGACGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCGGCTAAAGTGGCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCACTTGCATGCAGACCGATGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGACGATGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 957 46.19 MASTLFRLVVSTIFLDFDFPKSQPLSSHPSRPSSILRHLLLFLYPLLSPRVHGFVDLRVGKGVRGVSGNLLKIGVVVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVASQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPMKSSISYKKPRIEMVDDEEFFTVPDLG 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1955119 1957675 - CrPI670011_06g008660.1 Cre06g0866 500328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0866 318 ProSiteProfiles Zinc finger B-box type profile. 133 180 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 CDD Bbox1_BBX-like 86 128 IPR049808 -
Cre06g0866 318 PANTHER B-BOX ZINC FINGER PROTEIN 22 82 317 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre06g0866 318 Pfam B-box zinc finger 134 176 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 Pfam B-box zinc finger 84 126 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 ProSiteProfiles Zinc finger B-box type profile. 81 128 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 SMART bboxneu5 81 128 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 SMART bboxneu5 133 180 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 CDD Bbox1_BBX-like 137 179 IPR049808 -
Cre06g0866 318 Gene3D Classic Zinc Finger 81 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0866 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0866 Cre-Chr6:1955119 Cre07g1378 Cre-Chr7:28687336 8.40E-35 dispersed
Cre06g0866 Cre-Chr6:1955119 Cre08g1404 Cre-Chr8:27022092 5.70E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g2694 . 89 466 Orphan Transcription Factor Family AT5G61850 70.6 3.8e-123 438.7
Cre06g0866 . 82 248 Orphan Transcription Factor Family AT1G06040 67.8 1.5e-60 229.6
Cre07g1378 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53826 PF00643 zf-B_box 1.00E-07 No_clan Cre TF