Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0866 ATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTTTCTCTATCCCCTTCTTTCTCCAAGAGTTCATGGGTTCGTTGATCTTCGAGTAGGAAAGGGGGTAAGAGGGGTTTCCGGGAATCTATTGAAAATTGGTGTGGTAGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACCGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGACGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCGGCTAAAGTGGCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCACTTGCATGCAGACCGATGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGACGATGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 957 46.19 MASTLFRLVVSTIFLDFDFPKSQPLSSHPSRPSSILRHLLLFLYPLLSPRVHGFVDLRVGKGVRGVSGNLLKIGVVVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVASQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPMKSSISYKKPRIEMVDDEEFFTVPDLG 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1955119 1957675 - CrPI670011_06g008660.1 Cre06g0866 500328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0866 318 ProSiteProfiles Zinc finger B-box type profile. 133 180 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 CDD Bbox1_BBX-like 86 128 IPR049808 -
Cre06g0866 318 PANTHER B-BOX ZINC FINGER PROTEIN 22 82 317 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre06g0866 318 Pfam B-box zinc finger 134 176 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 Pfam B-box zinc finger 84 126 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 ProSiteProfiles Zinc finger B-box type profile. 81 128 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 SMART bboxneu5 81 128 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 SMART bboxneu5 133 180 IPR000315 GO:0008270(InterPro)
Cre06g0866 318 CDD Bbox1_BBX-like 137 179 IPR049808 -
Cre06g0866 318 Gene3D Classic Zinc Finger 81 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0866 Cre-Chr6:1955119 Cre07g1378 Cre-Chr7:28687336 8.40E-35 dispersed
Cre06g0866 Cre-Chr6:1955119 Cre08g1404 Cre-Chr8:27022092 5.70E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53826 PF00643 zf-B_box 1.00E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0866 - - - 0.0