Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0869 ATGGGGGTGTCCAACAATGGCGAATCTCGTTCCTGGAGTGCTTCTCAAACTACTGCAGCACATGAACACAGATGTGAAGGTTGCTGGAGAGCACAGGTCGACGTTGTTACAAGTTGTGAGCATAGTTCCGGCACTGGCCGGCGGCGATCTCTCACCGAATCAAGTGACAAGATTCAATTGGGTCAGTTTATTCATGTCGAACGGCTTGAGGCTGCTTCACCAGTCCCCATTCTTCACGGAGTTCGACCGGTGCCCGGTCGACACCCTTGTGTGGGGAGCCCTGAAGATATTGTTGCTACTCATTCTCCTGGGTTTCTTAACAATAATCCTAATTTGAAACCTTTGGACAAATTGAAACCGACCCCAAAAGTTTTAGGCCTCAGCATTGGTGGGGAGAAGGAGAAATCTGCGCCTGCGAGACTCAATGGCAATGCCAAGGAGGATAAGATTGACAAGAGAGCCTCACCCTTGAGCAGATCCAAGTCTCAGGCGTCAAAATTGACAGTGAATGTAGATGTGAAGAAGGAGCCTCTGACGAGACTAAAGTCGATGAATTCACGGTCGATACCCTCATCTCCAACAAGCTGTTATTCATTGCCTTCTTCATTTGAGAAGTTTGCCAACAGCATTAAGCAGCAGGGGAAGGTTAAGGCGTTGGCTAATGGAGCGACCAAGGTAGGAGCAGTTGAAAAGTCGAATCCTGTTCGTTCAGCCAGTCCTGTCCCCAAGAAAATGGGAGTGGGACATCAGATCAAACATTTAGTTCAGGGCATTGAGGTTGGGGCCAAGGCTCTGAGGAAGAGCTGGGAAGGGAATATGGAGACCAAAAGAAGAGACAATTCGATATTAAGAGCAAGCAAACTTGATCTCAAGCCTGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATCAAGTGAAAAGTTGCCATCAAGAGAGGAGAATAGGATTCAGGTGCCTGCAAAGTCATCTAAAGATGATCATAGCTTGCACGCATCTTCAAAGAAGAATGCTGCTAGTGGAGCTTTAGATAATCAGGAAAGGTCAAATAGACAAAAATCTTCTAGTGGAAGGAAATCCTCCTCAAGTGATGCAGCCGGATTCCCCGGAAACTTGGTGAAGATTCCTCTTAGTCATAAAAGATTGAGTGAAGGGAGTGTTTCATGGGCTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTAATGAGGCATAGAGATGCTGCACAAGCAGCAGCTATAGAGGCTATTCAAGAAGCTTCGGTGGCAGAGAGCTGTCTACGATGTTTGAGTATATTTTCTGAGTTAAACACTGCTGCAAAAGAGGACAATCCACAGCCTGCGGTAGAACAGTTTTTGACCCTTCATGCGAGCCTAACCAATGCTCACATGATAGCTGAATCTCTTTCGAAAACTAGTCTCTCTGGTTCAACCAATGAGAGCGAAGAAACCGCTTCAGAAGAAACAATGAAGGTCACATTAATGGCGAGAAAACAGGCTTCTGCTTGGGTTCAGGCTGCTTTAGCCACTAACCTTTCATCTTTTGCAGTTTACAGCCGTGATCCATCCTTGGCTCTAAGCCCGACCCCGACTTTATCTCTATCTCAAAACCAAAAGAGTGCATCTGCAAATCAGCCGATAGTAGTTTTAGAAAACTCATCTAAGAACAGCTCGTCAAAATCCCAAGGGAAGGTCCGCCAGATGATAAGCTCTAAACCTATTGGATCAGGAAATCAAAGTCGAACAAAGGAAGGAGCGACACTCGGTCAGAAGGTGCAGCCTCAACCTCCACCAGAATGGGTCAGAGGCAACGGTCTCGACGAAGCAGTTGACTTAGCCGAGATGTTACGGCTGCAATCCCAGGACTGGTTCTTGACATTCATGGAAAGGTTCTTGGATGCAGGTGTTGACACTGCAGCCTTGTCAGATAATGGACAATTAGCAGGAATATTGACTCAGCTGAAGAGTGTAAACGACTGGTTAGATGGCATAGCTTCTACCAAGGACGAAGGAGACACCACCCACATTTCGACTGAGACAATCGACAGGCTGAGGAAGAAGATCTACGAGTATCTTCTCATGCACGTCGAGTCTGCAGCTGCTGCACTCGGCGGGGGATCGCAGCCACTGCCACAGCAGATACAAGCAACCGAAACAAAAGCAAGAAGACGAAAAGTGGCCATTACTGGTAAGGAAGGATTAAGGA 2206 47.01 MGVSNNGESRSWSASQTTAAHEHRCEGCWRAQVDVVTSCEHSSGTGRRRSLTESSDKIQLGQFIHVERLEAASPVPILHGVRPVPGRHPCVGSPEDIVATHSPGFLNNNPNLKPLDKLKPTPKVLGLSIGGEKEKSAPARLNGNAKEDKIDKRASPLSRSKSQASKLTVNVDVKKEPLTRLKSMNSRSIPSSPTSCYSLPSSFEKFANSIKQQGKVKALANGATKVGAVEKSNPVRSASPVPKKMGVGHQIKHLVQGIEVGAKALRKSWEGNMETKRRDNSILRASKLDLKPEARVTTPRRSTSSEKLPSREENRIQVPAKSSKDDHSLHASSKKNAASGALDNQERSNRQKSSSGRKSSSSDAAGFPGNLVKIPLSHKRLSEGSVSWASLPSSLAKLGKEVMRHRDAAQAAAIEAIQEASVAESCLRCLSIFSELNTAAKEDNPQPAVEQFLTLHASLTNAHMIAESLSKTSLSGSTNESEETASEETMKVTLMARKQASAWVQAALATNLSSFAVYSRDPSLALSPTPTLSLSQNQKSASANQPIVVLENSSKNSSSKSQGKVRQMISSKPIGSGNQSRTKEGATLGQKVQPQPPPEWVRGNGLDEAVDLAEMLRLQSQDWFLTFMERFLDAGVDTAALSDNGQLAGILTQLKSVNDWLDGIASTKDEGDTTHISTETIDRLRKKIYEYLLMHVESAAAALGGGSQPLPQQIQATETKARRRKVAITGKEGLR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1980279 1986163 - CrPI670011_06g008690.1 Cre06g0869 500331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0869 735 MobiDBLite consensus disorder prediction 470 489 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 551 600 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 705 735 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 127 167 - -
Cre06g0869 735 PANTHER EXPRESSED PROTEIN 55 703 IPR010341 -
Cre06g0869 735 MobiDBLite consensus disorder prediction 305 332 - -
Cre06g0869 735 Pfam Domain of unknown function (DUF6857) 376 703 IPR049172 -
Cre06g0869 735 MobiDBLite consensus disorder prediction 271 296 - -
Cre06g0869 735 Pfam Plant protein of unknown function (DUF936) 55 99 IPR048297 -
Cre06g0869 735 MobiDBLite consensus disorder prediction 718 735 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 551 589 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 271 369 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 139 156 - -
Cre06g0869 735 MobiDBLite consensus disorder prediction 333 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0869 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0869 Cre-Chr6:1980279 Cre09g0345 Cre-Chr9:3364509 1.10E-08 dispersed
Cre08g1749 Cre-Chr8:29673530 Cre06g0869 Cre-Chr6:1980279 4.90E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34