Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0871 ATGGACATAACATTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCGGAGTACTCACCGGAACACTCTCCATCCGCTGCTGCTGCCGCCACCACAGCTGCTGCCACGGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGCGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGCTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTGACAACAACAAGCATAGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCAACTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACTCGGTTGGGCATTGTGGCGTCCAACCGCGGCCACTACCGGAGAAGAAGAAGGTGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA 1368 45.03 MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKLGWALWRPTAATTGEEEGGGGGDDSGGIYLTWKEEPVVWVSAWKP 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2015943 2017710 - CrPI670011_06g008710.1 Cre06g0871 500333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0871 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 453 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre06g0871 455 ProSiteProfiles GRAS family profile. 57 454 IPR005202 -
Cre06g0871 455 Pfam GRAS domain family 68 454 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1376 Cre-Chr4:32593805 Cre06g0871 Cre-Chr6:2015943 3.00E-116 dispersed
Cre06g0871 Cre-Chr6:2015943 Cre11g1204 Cre-Chr11:9983798 5.40E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53827 PF03514 GRAS 4.90E-95 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0871 K27743 - csv:101206730 773.467