Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0897 ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAACATGAATCTGCTTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTTGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGTTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCACGACGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.68 MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2315223 2317931 + CrPI670011_06g008970.1 Cre06g0897 500359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0897 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Cre06g0897 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cre06g0897 304 CDD RING-HC_SIAHs 51 89 - -
Cre06g0897 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre06g0897 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 105 IPR013083 -
Cre06g0897 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cre06g0897 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Cre06g0897 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cre06g0897 304 SUPERFAMILY RING/U-box 47 93 - -
Cre06g0897 304 Pfam Sina, zinc finger 102 177 - -
Cre06g0897 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Cre06g0897 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Cre06g0897 304 CDD Sina 167 295 - -
Cre06g0897 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cre06g0897 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1252 Cre-Chr5:12598998 Cre06g0897 Cre-Chr6:2315223 2.40E-22 dispersed
Cre06g0897 Cre-Chr6:2315223 Cre09g1760 Cre-Chr9:35969899 1.00E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0897 K04506 - csv:101209363 649.818