Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0901 ATGGCTTCTACTACTAGTCTTGTAGTTGGTTCTCTTGTTTGGTTGGAGGACTCTGAAGAAGCTTGGATAGAGGGCGAAGTTCTAGAACTTCATGGTGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGTAGTCAAAGCAGCTAATGTCTATCCCAAAGATTCTGAAGTGCCACCCTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTAATTGCTGTGAACCCTTTTACAAAGTTGCCCCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCTGCATTTGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATTCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACGAAGTTGCTTATGCGTTATCTTGCATATATGGGAGGGAGAGCTGCTGCTGAGGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAAGCATTTGGGAACGCAAAAACTGTTCGGAACAACAACTCAAGTCGTTTTGGTAAGTTTGTGGAGATCCAATTTGACCAGCGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCTCGTGTTTGTCAGGTGTCCGATCCAGAGAGAAACTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAGATTTCCATTATCTAAATCAATCAAACTGCCACGCTTTGGATGGAATTGATGATGCCAAGGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGGATAAGTTCGGAGGAGCAGGATGGAATATTTCGTGTTGTGGCTGCAATTCTTCATCTTGGAAACATTGAATTTGCAAAGGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCGGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGATTCTCTCTGCAAACGTGTGATTGTCACTCGTGATGAAACAATCACAAAGTGGCTGGATCCAAATTCTGCAGCCCTTAGCAGAGATGCTTTGGCAAAAATTGTATACTCAAGGTTATTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGGCAGGATCCTGATTCGAAATTCTTGATTGGAGTACTCGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAACAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAATCATAAACGCTTCAGCAAACCAAAATTAGCCCGGAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACCGATTTATTTCTCGACAAAAATAAAGATTATGTTGTTGCTGAACACCAAGCGCTCTTGAGTGCTTCCAAATGCTCCTTCGTGTCATGTTTGTTTCCTCCATTAGCAGAAGAATCTTCCAAATCTTCAAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTTCAATTGGTATCCCTGCTGGAAACTCTAAGTGCTACTGAGCCCCATTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTGCTATCTTTGAGAATAAGAATATATTACAACAACTACGATGCGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACGAGGAAAACTTTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGTTCTGATGAAGTGACTGCTTGCAAGAGGCTTCTGGAGAAGGTTGGACTTAAGGGATACCAGATTGGTAAGACGAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTTGATGCGCTCAGAACTGAGATCTTAGGGCGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATCTTGCACGTAGAAGTTTTGTATTGCTTCGGAGGTCAGCTATACGTCTGCAGTCTGCATGTAGAGGACAACTTGCTCGAGAAGTATTTGAGGGCTTGAGGAGAGAAGCTTCTTCCTTAATGATTCAAAGAAATTTGCGCATGCATATCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGAAATGAGCTACGCTTCAGAAGGCAATCTAAAGCAGCAATTATTATCCAGAGCTACTGTCGCAGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACAACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAGCTGAAGATGGCTGCAAAGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAGGAATTAACATGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGAAAGATATGCAGTTTCAATTGAAAGAAACAAAAGCGATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAGGCTGCAGATATTATACCAATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAATGATTGAGAAAATTTCCAGTGAAAATGAAAAGCTCAAGGCGTTGGTAAATTCACTGGAACAGAAAATTGATGAAACAGAGAAAAAGTATGAAGAGGCAAACAGAGTTAGTGAAGAAAGGTTGAAACAAGCATCAGAGGCAGAAACAAAAATTATTCAATTAAAGACTGCTATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAATCAGATTCTTCGGCAGCAGACCTTCCTGAAAACACCAGTAAAGAAAATGGCTGACCATCTTCCTATTGCAGCTGCAGAGAAACTGGAGAACGGTAACCATTCGATCGAAGATAACAGAATCGATGAGCAGTTTGTAACACCCGTGAAAACACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCACATTTTGAACATCAACAAGAGAATGTTGATGCTCTCGTTAGTTGTGTCATGAATAACATTGGGTTTAGTAATGGGAAGCCTGTAGCTGCATTTACCATTTATAAATGCCTTCTTCACTGGAAATCTTTTGAAGCTGAAAAAACAAGTGTATTTGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCAAACACATCCGCACTACTGTTCTTGCTTCAACGAAGCTTGAAAGCTCCTGGTGCTCCTCGAAAACCTCCACCTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAACAATCTAGGATCTGCACTTAAGGTCGTACGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACTGCATATGTCGAAAAAATATTTGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTTTCCTTGTGTATCCAAGCACCAAGAATTTCGAAAGGAGTATTGCGATCTGGAAGATCATTTGGGAAAGATACTCAAACAAATTACTGGCAGAGCATCATAGAAAGCCTTAACTTGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCACAAATTCTCATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTGTTCAATAGCCTCCTCCTCCGTCGAGAATGTTGTACATTTAGCAATGGGGAATATGTAAAATCTGGGTTAGCTGAGTTGGAGCTCTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCCTACGATGAAATCACCAATGATCTTTGCCCTATCCTGAGCGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGACGACAACTATAACACTCGAAGCGTATCACCTGATGTAATATCTAGTATGAGAGTGCTCATGACTGAGGACTCCAACAATGCAGTCAGCAGTTCCTTCTTATTGGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTATCAAACTCGCTGCAAGAGAAAGATTTCTCCGGTGTGAAGCCCGCCGACGAACTACTCGAAAACCCAGCCTTCCAATTTTTACATGAGTAA 4527 40.91 MASTTSLVVGSLVWLEDSEEAWIEGEVLELHGEEIKVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADSAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRDFHYLNQSNCHALDGIDDAKEYIATRKAMEVVGISSEEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSAIRLQSACRGQLAREVFEGLRREASSLMIQRNLRMHICRKAYKEKYSSAVSIQTGMRGMAARNELRFRRQSKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALKDMQFQLKETKAMFEKEREAAKKAADIIPIVKEVPVLDNAMIEKISSENEKLKALVNSLEQKIDETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEEKFSNIESENQILRQQTFLKTPVKKMADHLPIAAAEKLENGNHSIEDNRIDEQFVTPVKTLKRISSESEIKLSRSHFEHQQENVDALVSCVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAPGAPRKPPPSTSLFGRMTMGFRSSPSSNNLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQAPRISKGVLRSGRSFGKDTQTNYWQSIIESLNLLLCTLKENFVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE 1508
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2375693 2394797 - CrPI670011_06g009010.1 Cre06g0901 500363
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0901 1508 Gene3D - 439 623 - -
Cre06g0901 1508 Coils Coil 877 943 - -
Cre06g0901 1508 Gene3D - 252 310 - -
Cre06g0901 1508 ProSiteProfiles IQ motif profile. 737 761 - -
Cre06g0901 1508 FunFam Myosin heavy chain 252 307 - -
Cre06g0901 1508 Gene3D - 667 731 - -
Cre06g0901 1508 CDD MyosinXI_CBD 1110 1477 IPR037975 GO:0007015(InterPro)
Cre06g0901 1508 PANTHER MYOSIN 828 1453 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cre06g0901 1508 Pfam DIL domain 1330 1434 IPR002710 -
Cre06g0901 1508 FunFam Myosin 2 312 424 - -
Cre06g0901 1508 ProSiteProfiles IQ motif profile. 854 883 - -
Cre06g0901 1508 FunFam Class V myosin 439 584 - -
Cre06g0901 1508 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 Coils Coil 972 1048 - -
Cre06g0901 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 883 IPR027417 -
Cre06g0901 1508 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 Pfam IQ calmodulin-binding motif 759 776 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 ProSiteProfiles IQ motif profile. 758 787 - -
Cre06g0901 1508 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 SMART DIL_2 1329 1436 IPR002710 -
Cre06g0901 1508 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 FunFam Myosin XI D 735 784 - -
Cre06g0901 1508 CDD MYSc_Myo11 76 720 IPR036018 -
Cre06g0901 1508 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cre06g0901 1508 SMART MYSc_2a 57 733 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 ProSiteProfiles Dilute domain profile. 1159 1454 IPR002710 -
Cre06g0901 1508 Gene3D - 834 882 - -
Cre06g0901 1508 Gene3D - 735 784 - -
Cre06g0901 1508 Gene3D - 785 833 - -
Cre06g0901 1508 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre06g0901 1508 ProSiteProfiles IQ motif profile. 783 812 - -
Cre06g0901 1508 FunFam unconventional myosin-Va 833 881 - -
Cre06g0901 1508 ProSiteProfiles IQ motif profile. 806 835 - -
Cre06g0901 1508 ProSiteProfiles IQ motif profile. 831 860 - -
Cre06g0901 1508 FunFam unconventional myosin-Va 785 832 - -
Cre06g0901 1508 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cre06g0901 1508 SMART iq_5 853 875 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 SMART iq_5 734 756 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 SMART iq_5 830 852 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 SMART iq_5 782 804 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 SMART iq_5 757 779 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 SMART iq_5 805 827 IPR000048 GO:0005515(InterPro)
Cre06g0901 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 785 IPR027417 -
Cre06g0901 1508 Gene3D - 11 55 IPR008989 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0051015(InterPro)
Cre06g0901 1508 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1734 Cre-Chr2:30583782 Cre06g0901 Cre-Chr6:2375693 6.20E-163 transposed
Cre02g2007 Cre-Chr2:33498740 Cre06g0901 Cre-Chr6:2375693 0.00E+00 transposed
Cre03g1801 Cre-Chr3:34849199 Cre06g0901 Cre-Chr6:2375693 0.00E+00 transposed
Cre08g0922 Cre-Chr8:22370890 Cre06g0901 Cre-Chr6:2375693 0.00E+00 transposed
Cre09g0341 Cre-Chr9:3326430 Cre06g0901 Cre-Chr6:2375693 0.00E+00 transposed
Cre09g0765 Cre-Chr9:7501834 Cre06g0901 Cre-Chr6:2375693 0.00E+00 transposed
Cre11g2245 Cre-Chr11:34221993 Cre06g0901 Cre-Chr6:2375693 2.40E-147 transposed
Cre05g0467 Cre-Chr5:4215094 Cre06g0901 Cre-Chr6:2375693 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0901 K10357 - csv:101208630 2897.07